Campylobacter helveticus 2013D-9613 |
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Putative Campylobacter helveticus 2013D-9613 RM systems
Ref: Pruckler,J. et al. unpublished
REBASE ref # 28459
Complete sequence: 1,811,183 bp
GenBank #: CP037747
REBASE acronym: Che9613
Org_num: 33908
All begin A0073_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3120 | UDP-N-acetylmuramate--L-alanine ligase | |||
| 3125 | R | Cup11541ORF1107P (94% identity) | Che9613ORF3135P | |
| 3130 | S | S.Cup14913ORF1062P (65% identity) | S.Che9613ORF3135P | |
| 3135 | M | M.Cup11541ORF1107P (96% identity) | M.Che9613ORF3135P | |
| 3140 | 1224 aa hypothetical protein | |||
| 6310 | recombination protein RecO | |||
| 6315 | R | Csp93256ORF8455P (87% identity) | Che9613ORF6335P | |
| 6320 | S | S.Cla16712ORF1577P (41% identity) | S1.Che9613ORF6335P | |
| 6325 | S | S.Cla16712ORF1577P (32% identity) | S2.Che9613ORF6335P | |
| 6330 | anticodon nuclease | |||
| 6335 | M | M.Hca5491ORF530P (89% identity) | M.Che9613ORF6335P | |
| 6340 | site-specific DNA-methyltransferase | |||
| 7175 | gamma carbonic anhydrase family protein | |||
| 7180 | S | M.HpyK043ORF2525P (16% identity) | S.Che9613ORF7180P | |
| 7205 | 253 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 355 | succinyl-diaminopimelate desuccinylase | |||
| 360 | RM | Cup12264ORF1078P (85% identity) | Che9613ORF360P | |
| 365 | 293 aa hypothetical protein | |||
| 595 | prephenate dehydratase | |||
| 600 | R | Hfe13102ORF414P (95% identity) | Che9613ORF605P | |
| 605 | M | M.HbiMUORF5475P (87% identity) | M.Che9613ORF605P | |
| 610 | 471 aa hypothetical protein | |||
| 2110 | DUF2920 family protein | |||
| 2115 | RM | Che51209ORF934P (99% identity) | Che9613ORF2115P | |
| 2120 | tRNA (uridine(54)-C5)-methyltransferase TrmA | |||
| 2180 | molybdopterin-guanine dinucleotide biosynthesis | |||
| 2185 | R | Che51209IIP (99% identity) | Che9613ORF2190P | |
| 2190 | M | M.Che51209II (99% identity) | M.Che9613ORF2190P | |
| 2195 | 429 aa hypothetical protein | |||
| 2620 | phosphate ABC transporter substrate-binding | |||
| 2625 | M | M.Cup11541ORF755P (94% identity) | M.Che9613ORF2625P | |
| 2630 | R | Cup11541ORF755P (97% identity) | Che9613ORF2625P | |
| 2635 | 172 aa hypothetical protein | |||
| 4875 | DNA polymerase I | |||
| 4880 | M | M.Che51209ORF392P (100% identity) | M.Che9613ORF4880P | |
| 4885 | R | Che51209ORF392P (94% identity) | Che9613ORF4880P | |
| 4890 | glutamine-hydrolyzing GMP synthase | |||
| 5325 | bifunctional | |||
| 5330 | M | M.Che51209I (93% identity) | M.Che9613ORF5330P | |
| 5335 | R | Che51209IP (98% identity) | Che9613ORF5330P | |
| 5340 | imidazole glycerol phosphate synthase subunit | |||
| 5645 | 50S ribosomal protein L9 | |||
| 5650 | RM | HbiMUORF2080P (55% identity) | Che9613ORF5650P | |
| 5655 | 0 aa hypothetical protein | |||
| 5935 | ABC-F family ATP-binding cassette | |||
| 5940 | M | M.HciP01DORFZP (92% identity) | M.Che9613ORF5940P | |
| 5945 | R | Cup197059ORF1480P (91% identity) | Che9613ORF5940P | |
| 5950 | ferredoxin | |||
| 6245 | carboxynorspermidine decarboxylase | |||
| 6250 | R | HciP01DORFTP (87% identity) | Che9613ORF6255P | |
| 6255 | M | M.HciP01DORFTP (79% identity) | M.Che9613ORF6255P | |
| 6260 | molybdopterin synthase sulfur carrier subunit | |||
| 6505 | 219 aa hypothetical protein | |||
| 6510 | M | M.Che12470ORF92P (96% identity) | M.Che9613ORF6510P | |
| 6515 | energy transducer TonB | |||
| 6780 | type I DNA topoisomerase | |||
| 6785 | R | Che51209IIIP (99% identity) | Che9613ORF6790P | |
| 6790 | M | M.Che51209III (94% identity) | M.Che9613ORF6790P | |
| 6795 | adenine methyltransferase | |||
| 6790 | DNA modification methylase | |||
| 6795 | M | M2.Che51209ORF18P (98% identity) | M1.Che9613ORF6795P | |
| 6800 | M | M1.HbiAAQJHORF5740P (98% identity) | M2.Che9613ORF6795P | |
| 6805 | R | CupORF1489P (96% identity) | Che9613ORF6795P | |
| 6810 | N-acetyl-gamma-glutamyl-phosphate reductase | |||
| 6900 | crossover junction endodeoxyribonuclease RuvC | |||
| 6905 | R | Hbi43879ORF195P (98% identity) | Che9613ORF6910P | |
| 6910 | M | M.Hbi43879ORF195P (95% identity) | M.Che9613ORF6910P | |
| 6915 | Dam family site-specific | |||
| 6910 | site-specific DNA-methyltransferase | |||
| 6915 | M | M2.Cup11541IV (93% identity) | M.Che9613ORF6915P | |
| 6920 | DNA methyltransferase | |||
| 6915 | Dam family site-specific | |||
| 6920 | M | M.Hbi43879ORF490P (95% identity) | M.Che9613ORF6920P | |
| 6925 | rRNA pseudouridine synthase | |||
| 8100 | ribosome biogenesis GTPase Der | |||
| 8105 | M | M.Che51209V (98% identity) | M.Che9613ORF8105P | |
| 8110 | 0 aa hypothetical protein | |||
| 8345 | acetyl-CoA carboxylase biotin carboxylase | |||
| 8350 | RM | Cup12264ORF1425P (65% identity) | Che9613ORF8350P | |
| 8355 | 16S rRNA (guanine(527)-N(7))-methyltransferase | |||
| 8405 | methionyl-tRNA formyltransferase | |||
| 8410 | RM | Hci12221ORF1504P (92% identity) | Che9613ORF8410P | |
| 8415 | S | Che51209ORF1555P (6% identity) | S1.Che9613ORF8410P | |
| 8420 | S | S2.Hci12221ORF1504P (93% identity) | S2.Che9613ORF8410P | |
| 8425 | peptide chain release factor 1 | |||
| 9255 | preprotein translocase subunit SecA | |||
| ??? | RM | Cup11541ORF576P (72% identity) | Che9613ORF9260P | |
| ??? | S | Cup11541ORF576P (25% identity) | S.Che9613ORF9260P | |
| 9265 | ABC transporter permease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2680 | pyridoxine 5-phosphate synthase | |||
| ??? | M | M.Che51209ORF820P (96% identity) | M.Che9613ORF2685P | |
| 2695 | R | Che51209ORF820P (98% identity) | Che9613ORF2685P | |
| 2700 | argininosuccinate synthase | |||
| 7215 | radical SAM/SPASM domain-containing protein | |||
| 7220 | M | M.Che51209ORF1768P (96% identity) | M.Che9613ORF7220P | |
| 7225 | R | HbiMUORF3930P (98% identity) | Che9613ORF7220P | |
| 7230 | Na+/H+ antiporter family protein | |||