Ref:

REBASE ref # 22501

Sequence length:GenBank #:
chromosome 1: 2,121,917 bp LR216058
chromosome 1: 2,147,673 bp LR216038
chromosome 1: 2,103,862 bp LR216035
chromosome 1: 2,074,160 bp LR216067
chromosome 1: 2,066,251 bp LR216064
chromosome 1: 2,120,740 bp LR216065
chromosome 1: 2,074,160 bp LR536843
chromosome 1: 2,133,955 bp LR536845
chromosome 1: 2,074,861 bp LR216050
chromosome 1: 2,026,174 bp LR216062

REBASE acronym:

Org_num:

 

All begin SAMEA104035599_, SAMEA2434610_, SAMEA2553885_, SAMEA3431333_, SAMEA3431391_, SAMEA3431607_, SAMEA3714487_, SAMEA3714520_

Type I
ORF Gene Most similar Specificity Name
 
chromosome 1
 
511 Protein of uncharacterised function (DUF2812)
512 R Spnp6ORF4910P (100% identity) Spn6565ORF513P
513 M M.Spns521I (100% identity) M.Spn6565ORF513P
514 S S1.Spn8854ORF458P (100% identity) CACNNNNNNNCTG S1.Spn6565ORF513P
515 integrase/recombinase, phage integrase family
516 type I restriction-modification system, S
517 S S2.SpnsD39dORF10335P (100% identity) S2.Spn6565ORF513P
518 hyperosmolarity resistance protein Ebh
 
780 carbamoylphosphate synthase large subunit
781 M M.SpnsD39dORF3010P (100% identity) M.Spn6565ORF781P
782 S S.Spnp5ORF8060P (99% identity) S.Spn6565ORF781P
783 R Spn9165ORF815P (100% identity) Spn6565ORF781P
784 arginine repressor
 
chromosome 1
 
515 Uncharacterised protein
516 S S4.Spn0848ORF521P (100% identity) S4.Spn0967ORF521P
517 S S2.Spnd6c6ORF465P (100% identity) S3.Spn0967ORF521P
??? S S2.Spns521I (90% identity) S2.Spn0967ORF521P
519 integrase/recombinase, phage integrase family
??? S S1.Spn0848ORF521P (99% identity) S1.Spn0967ORF521P
521 M M.Spns521I (100% identity) M.Spn0967ORF521P
522 R Spn26365ORFDP (100% identity) Spn0967ORF521P
523 Uncharacterised protein
 
860 carbamoylphosphate synthase large subunit
861 M M.SpnsD39dORF3010P (100% identity) M.Spn0967ORF861P
862 S S1.SpnN214ORF9740P (100% identity) S1.Spn0967ORF861P
863 S S2.Spn8787ORF851P (100% identity) S2.Spn0967ORF861P
864 toxin-antitoxin system, antitoxin component,AbrB
865 prophage maintenance system killer protein
866 integrase/recombinase, phage integrase family
??? S S2.SpnXen35ORF4400P (100% identity) S3.Spn0967ORF861P
868 R Spn26365ORFCP (100% identity) Spn0967ORF861P
869 arginine repressor
 
chromosome 1
 
423 Uncharacterised protein
424 S S1.SpnSWU02ORFDP (75% identity) S4.Spn5675ORF429P
425 integrase/recombinase, phage integrase family
426 S S2.Spns521I (90% identity) S3.Spn5675ORF429P
427 S S4.Spn9197ORF476P (100% identity) S2.Spn5675ORF429P
428 S S1.Spn9475ORF489P (50% identity) S1.Spn5675ORF429P
429 M M.SpnTORF544P (100% identity) M.Spn5675ORF429P
430 R SpnTORF544P (100% identity) Spn5675ORF429P
431 Protein of uncharacterised function (DUF2812)
 
843 carbamoylphosphate synthase large subunit
844 M M.SpnsD39dORF3010P (100% identity) M.Spn5675ORF844P
845 S S1.SpnBHN97III (99% identity) S1.Spn5675ORF844P
846 toxin-antitoxin system, antitoxin component,AbrB
847 prophage maintenance system killer protein
848 integrase/recombinase, phage integrase family
849 S S3.Spn6505ORF772P (99% identity) S2.Spn5675ORF844P
850 R SpnWCH43ORFAP (100% identity) Spn5675ORF844P
851 chlorohydrolase
 
chromosome 1
 
488 Uncharacterised protein
489 S S3.Spn6637ORF506P (100% identity) S4.Spnd6c8ORF494P
490 integrase/recombinase, phage integrase family
491 S S2.Spns521I (90% identity) S3.Spnd6c8ORF494P
492 S S2.SpnPne2ORF5520P (75% identity) S2.Spnd6c8ORF494P
493 S restriction endonuclease S subunit S1.Spnd6c8ORF494P
494 M M.Sps7493ORF8970P (100% identity) M.Spnd6c8ORF494P
495 R SpnsD39dORF9220P (100% identity) Spnd6c8ORF494P
496 Uncharacterised protein
 
800 carbamoylphosphate synthase large subunit
801 M M.SpnsD39dORF3010P (99% identity) M.Spnd6c8ORF801P
802 S S1.Spn12495II (100% identity) GAYNNNNNNTATC S1.Spnd6c8ORF801P
803 toxin-antitoxin system, antitoxin component,AbrB
804 prophage maintenance system killer protein
805 integrase/recombinase, phage integrase family
806 S S3.SpnSV36ORF693P (91% identity) S2.Spnd6c8ORF801P
807 R Spn9197ORF809P (100% identity) Spnd6c8ORF801P
808 arginine repressor
 
chromosome 1
 
460 Uncharacterised protein
??? S S.Spn6CORFKP (25% identity) S4.Spnd6c6ORF465P
461 S S3.Spn13755ORF491P (100% identity) S3.Spnd6c6ORF465P
462 S S2.SpnSWU02ORFDP (100% identity) S2.Spnd6c6ORF465P
463 integrase/recombinase, phage integrase family
464 S S3.SpnsD39cORF3680P (56% identity) S1.Spnd6c6ORF465P
465 M M.SpnINVORF4500P (100% identity) M.Spnd6c6ORF465P
466 R SpnINVORF4500P (100% identity) Spnd6c6ORF465P
467 Protein of uncharacterised function (DUF2812)
 
806 carbamoylphosphate synthase large subunit
807 M M.SpnsD39dORF3010P (100% identity) M.Spnd6c6ORF807P
808 S S.SpnPF2ORF11980P (87% identity) S1.Spnd6c6ORF807P
??? S S1.SpnXen35ORF4400P (15% identity) S2.Spnd6c6ORF807P
809 toxin-antitoxin system, antitoxin component,AbrB
810 prophage maintenance system killer protein
811 integrase/recombinase, phage integrase family
??? S restriction endonuclease subunit S S3.Spnd6c6ORF807P
812 IS1167, transposase
813 R SpnGA22FORFCP (99% identity) Spnd6c6ORF807P
814 arginine repressor
 
chromosome 1
 
430 Uncharacterised protein
431 S S1.Spns521I (42% identity) S5.Spn6c6ORF438P
432 S S1.SpnCGORF484P (41% identity) S4.Spn6c6ORF438P
433 integrase/recombinase, phage integrase family
??? S S2.SpnsD39dORF10335P (76% identity) S3.Spn6c6ORF438P
435 integrase/recombinase, phage integrase family
436 S S1.Spn947ORFBP (93% identity) S2.Spn6c6ORF438P
437 S S1.SpnXen35ORF2555P (20% identity) S1.Spn6c6ORF438P
438 M M.Spnd6c6ORF465P (100% identity) M.Spn6c6ORF438P
439 R Spnd6c6ORF465P (100% identity) Spn6c6ORF438P
440 Protein of uncharacterised function (DUF2812)
 
785 carbamoylphosphate synthase large subunit
786 M M.SpnsD39dORF3010P (100% identity) M.Spn6c6ORF786P
787 S S1.SpnCGORF835P (100% identity) S1.Spn6c6ORF786P
788 S S2.SpnCGORF835P (100% identity) S2.Spn6c6ORF786P
789 toxin-antitoxin system, antitoxin component,AbrB
790 prophage maintenance system killer protein
791 integrase/recombinase, phage integrase family
792 S type I restriction-modification system subunit S3.Spn6c6ORF786P
793 R SpnINVORF7850P (100% identity) Spn6c6ORF786P
794 IS1380-Spn1 transposase
 
chromosome 1
 
497 Uncharacterised protein
498 S S3.Spn6637ORF506P (100% identity) S4.Spnd6c8ORF494P
499 Tyrosine recombinase XerC
500 S S2.Spns521I (90% identity) S3.Spnd6c8ORF494P
501 S S2.SpnPne2ORF5520P (75% identity) S2.Spnd6c8ORF494P
502 S Uncharacterised protein S1.Spnd6c8ORF494P
503 M M.Sps7493ORF8970P (100% identity) M.Spnd6c8ORF494P
504 R SpnsD39dORF9220P (100% identity) Spnd6c8ORF494P
505 Uncharacterised protein
 
814 carbamoyl phosphate synthase-like protein
815 M M.SpnsD39dORF3010P (99% identity) M.Spnd6c8ORF801P
816 S S1.Spn12495II (100% identity) GAYNNNNNNTATC S1.Spnd6c8ORF801P
817 Uncharacterised protein
818 death-on-curing family protein
819 Tyrosine recombinase XerC
820 S S3.SpnSV36ORF693P (91% identity) S2.Spnd6c8ORF801P
821 R Spn9197ORF809P (100% identity) Spnd6c8ORF801P
822 Arginine regulator
 
chromosome 1
 
493 Uncharacterised protein
494 S S2.SpnL1900ORF2320P (99% identity) S3.Spn0967ORF498P
495 S S2.Spns521I (90% identity) S2.Spn0967ORF498P
496 Tyrosine recombinase XerC
497 S S1.Spn11897ORF6P (100% identity) CRAANNNNNNNNCTG S1.Spn0967ORF498P
498 M M.Sps7493ORF8970P (100% identity) M.Spn0967ORF498P
499 R Spn96ORF4545P (99% identity) Spn0967ORF498P
500 Uncharacterised protein
 
846 carbamoyl phosphate synthase-like protein
847 M M.SpnsD39dORF3010P (99% identity) M.Spn0967ORF847P
848 S S1.Spn97ORF8600P (100% identity) S1.Spn0967ORF847P
849 S S2.SpnSP89I (99% identity) S2.Spn0967ORF847P
850 Uncharacterised protein
851 death-on-curing family protein
852 Tyrosine recombinase XerC
??? S S4.SpnSP89IP (73% identity) S3.Spn0967ORF847P
853 R SpnWCH43ORFAP (97% identity) Spn0967ORF847P
854 Arginine regulator
 
chromosome 1
 
482 Protein of uncharacterised function (DUF2812)
483 R Spn8826ORF610P (100% identity) Spn6505ORF484P
484 M M.SpnCGORF484P (100% identity) M.Spn6505ORF484P
485 S S1.Spnp5ORF4640P (99% identity) CRAANNNNNNNNCTG S1.Spn6505ORF484P
486 integrase/recombinase, phage integrase family
487 S S2.Spn2581ORF571P (100% identity) S2.Spn6505ORF484P
488 S S3.SpnPORF531P (60% identity) S3.Spn6505ORF484P
489 DNA or RNA helicases of superfamily II
 
771 carbamoylphosphate synthase large subunit
772 M M.Spns521II (100% identity) M.Spn6505ORF772P
773 S S1.Spn574II (100% identity) S1.Spn6505ORF772P
774 toxin-antitoxin system, antitoxin component,AbrB
775 prophage maintenance system killer protein
776 integrase/recombinase, phage integrase family
777 S S2.Spns521II (100% identity) S2.Spn6505ORF772P
778 S S2.Spn33774ORF155P (100% identity) S3.Spn6505ORF772P
779 R SpnN214ORF4780P (100% identity) Spn6505ORF772P
780 chlorohydrolase
 
chromosome 1
 
413 Uncharacterised protein
414 S S2.SpnL1900ORF2320P (99% identity) S2.Spn6816ORF416P
415 S S1.Spn71ORFAP (100% identity) CRAANNNNNNNNCTT S1.Spn6816ORF416P
416 M M.Sps7493ORF8970P (100% identity) M.Spn6816ORF416P
417 R Spn2112ORFDP (100% identity) Spn6816ORF416P
418 Protein of uncharacterised function (DUF2812)
 
827 site-specific recombinase
828 M M.SpnsD39dORF3010P (50% identity) M.Spn6816ORF828P
829 S S1.Spn0410bORF6230P (100% identity) S1.Spn6816ORF828P
830 toxin-antitoxin system, antitoxin component,AbrB
831 prophage maintenance system killer protein
832 integrase/recombinase, phage integrase family
833 S S2.SpnSV36ORF693P (43% identity) S2.Spn6816ORF828P
??? S S3.Spn0410bORF6230P (100% identity) S3.Spn6816ORF828P
834 R Spn5ORF8390P (100% identity) Spn6816ORF828P
835 chlorohydrolase
Type II
ORF Gene Most similar Specificity Name
 
chromosome 1
 
1039 L-lactate dehydrogenase 1
1040 RM SpnsD39dORF4855BP (100% identity) TCGAG Spn6565ORF1040BP
1041 RM Spn9165ORF1211AP (100% identity) TCGAG Spn6565ORF1040AP
1042 cytotoxic translational repressor of
 
1220 U32 family peptidase
??? R SpnTIGR4ORF6680P (95% identity) TCTAGA Spn6565ORF1223P
1223 M M.Spnd6c6ORF1274P (98% identity) TCTAGA M.Spn6565ORF1223P
1224 AraC family transcriptional regulator
 
1348 Uncharacterised protein
1349 M M.Spnp6ORF10960P (100% identity) M.Spn6565ORF1349P
1350 Uncharacterised protein
 
1710 dpnD protein
1711 R SpnsD39dORF3910P (100% identity) GATC Spn6565ORF1711P
1712 thioesterase
 
chromosome 1
 
1199 ATPase involved in DNA repair
1200 R Spn5553ORF1257P (100% identity) Spn0967ORF1201P
1201 M M.SpnSP23ORF5020P (100% identity) M.Spn0967ORF1201P
1202 125 aa hypothetical cytosolic protein
 
1314 Uncharacterised protein
1315 M M.Spn26365ORFEP (94% identity) M.Spn0967ORF1315P
1316 replication initiator protein A
 
1414 restriction endonuclease R.XbaI
1415 M M.Spns521III (100% identity) TCTAGA M.Spn0967ORF1415P
1416 GMP synthase
 
1796 xanthine permease
1797 R Spnp2ORF17910P (100% identity) GATC Spn0967ORF1798P
1798 M M1.Spnp2ORF17910P (100% identity) GATC M1.Spn0967ORF1798P
1799 M M2.Spnp2ORF17910P (100% identity) GATC M2.Spn0967ORF1798P
1800 thioesterase
 
chromosome 1
 
542 valyl-tRNA synthetase
543 M M.Spnp1ORF5090P (100% identity) M.Spn5675ORF543P
544 Uncharacterized conserved protein
 
1300 transposase
1301 M M.Spnd6c6ORF1274P (99% identity) TCTAGA M.Spn5675ORF1301P
??? R SpnTIGR4ORF6680P (93% identity) TCTAGA Spn5675ORF1301P
1304 U32 family peptidase
 
1657 dpnD protein
1658 R SpnsD39dORF3910P (100% identity) GATC Spn5675ORF1658P
1659 thioesterase
 
2091 Uncharacterised protein
2092 M M.Spn19343ORF7550P (95% identity) M.Spn5675ORF2092P
2093 single-strand binding protein
 
chromosome 1
 
1113 arsenate reductase-like glutaredoxin family
1114 M M.SpnXen35ORF6620P (100% identity) M.Spnd6c8ORF1114P
1115 Uncharacterised protein
 
1199 U32 family peptidase
1200 R R1.SpnPne3ORF13830P (100% identity) Spnd6c8ORF1201P
1201 M M.Spn2369ORF1361P (100% identity) M.Spnd6c8ORF1201P
1202 AraC family transcriptional regulator
 
1580 dpnD protein
1581 R SpnsD39dORF3910P (100% identity) GATC Spnd6c8ORF1581P
1582 thioesterase
 
1736 L-lactate dehydrogenase 1
1737 RM SpnsD39dORF4855BP (100% identity) TCGAG Spnd6c8ORF1737BP
1738 RM SpnsD39dORF4855AP (100% identity) TCGAG Spnd6c8ORF1737AP
1739 cytotoxic translational repressor of
 
chromosome 1
 
513 valyl-tRNA synthetase
514 M M.Spnp1ORF5090P (100% identity) M.Spnd6c6ORF514P
515 Predicted ATP-binding protein involved in
 
1271 U32 family peptidase
??? R SpnJ015ORF6085P (100% identity) TCTAGA Spnd6c6ORF1274P
1274 M M.SpnPORF1452P (100% identity) TCTAGA M.Spnd6c6ORF1274P
1275 AraC family transcriptional regulator
 
1674 xanthine permease
1675 R SpnV0139ORF5080P (100% identity) GATC Spnd6c6ORF1676P
1676 M M.SpnV0139ORF5080P (100% identity) GATC M.Spnd6c6ORF1676P
1677 degenerate transposase
 
chromosome 1
 
1273 U32 family peptidase
??? R SpnF3030ORF6695P (100% identity) TCTAGA Spn6c6ORF1276P
1276 M M.Spns521III (100% identity) TCTAGA M.Spn6c6ORF1276P
1277 AraC family transcriptional regulator
 
1687 dpnD protein
1688 R SpnsD39dORF3910P (100% identity) GATC Spn6c6ORF1688P
1689 thioesterase
 
1940 Uncharacterised protein
1941 M M.Spnp8140ORFBP (99% identity) M.Spn6c6ORF1941P
1942 single-strand binding protein family
 
chromosome 1
 
1131 Regulatory protein spx
1132 M M.SpnXen35ORF6620P (100% identity) M.Spnd6c8ORF1114P
1133 Uncharacterised protein
 
1219 Uncharacterized protease yhbU precursor
1220 R R1.SpnPne3ORF13830P (100% identity) Spnd6c8ORF1201P
1221 M M.Spn2369ORF1361P (100% identity) M.Spnd6c8ORF1201P
1222 Regulatory protein soxS
 
1607 Uncharacterised protein
1608 R SpnsD39dORF3910P (100% identity) GATC Spnd6c8ORF1581P
1609 Acyl-coenzyme A thioesterase PaaI
 
1763 L-lactate dehydrogenase
1764 RM SpnsD39dORF4855BP (100% identity) TCGAG Spnd6c8ORF1737BP
1765 RM SpnsD39dORF4855AP (100% identity) TCGAG Spnd6c8ORF1737AP
1766 addiction module toxin, RelE/StbE family
 
chromosome 1
 
26 Uncharacterised protein
27 M M.Spn6635ORF1522P (100% identity) M.Spn0967ORF27P
28 Uncharacterised protein
 
1311 protease
??? R Spnp4ORF13650P (100% identity) TCTAGA Spn0967ORF1314P
1314 M M.Spn83227ORFDP (98% identity) TCTAGA M.Spn0967ORF1314P
1315 GMP synthase [glutamine-hydrolyzing]
 
1699 purine permease ygfU
1700 R Spnp2ORF17910P (100% identity) GATC Spn0967ORF1798P
1701 M M1.Spnp2ORF17910P (100% identity) GATC M1.Spn0967ORF1798P
1702 M M2.Spnp2ORF17910P (100% identity) GATC M2.Spn0967ORF1798P
1703 Acyl-coenzyme A thioesterase PaaI
 
1993 Uncharacterised protein
1994 R Spn3176ORFAP (100% identity) Spn0967ORF1995P
??? M M.Spn112ORF2082P (100% identity) M.Spn0967ORF1995P
1997 Uncharacterised protein
 
2201 Helix-destabilizing protein
2202 M M.Spn54ORF19090P (100% identity) M.Spn0967ORF2202P
2203 Uncharacterised protein
 
chromosome 1
 
914 Uncharacterised protein
915 M M.Ssa39RORF6565P (100% identity) M.Spn6505ORF915P
916 Uncharacterised protein
 
1120 L-lactate dehydrogenase 1
1121 RM SpnsD39dORF4855BP (100% identity) TCGAG Spn6505ORF1121BP
1122 RM SpnBC1ORF1495AP (100% identity) TCGAG Spn6505ORF1121AP
1123 cytotoxic translational repressor of
 
1312 restriction endonuclease R.XbaI
1313 M M.Spn06ORF12850P (100% identity) TCTAGA M.Spn6505ORF1313P
1314 AraC family transcriptional regulator
 
1679 dpnD protein
1680 R SpnsD39dORF3910P (100% identity) GATC Spn6505ORF1680P
1681 thioesterase
 
chromosome 1
 
773 DNA topoisomerase III
774 M M.Spn2112ORFAP (100% identity) M.Spn6816ORF774P
 
1261 U32 family peptidase
??? R Spnd6c6ORF1274P (100% identity) TCTAGA Spn6816ORF1264P
1264 M M.Spns521III (100% identity) TCTAGA M.Spn6816ORF1264P
1265 GMP synthase
 
1614 xanthine permease
1615 R Spnp2ORF17910P (100% identity) GATC Spn6816ORF1616P
1616 M M1.Spnp2ORF17910P (100% identity) GATC M1.Spn6816ORF1616P
1617 M M2.Spnp2ORF17910P (100% identity) GATC M2.Spn6816ORF1616P
1618 thioesterase
Type III
ORF Gene Most similar Specificity Name
 
chromosome 1
 
724 Uncharacterised protein
725 M M.Spn8854ORF772P (100% identity) M.Spn5675ORF725P
726 DNA or RNA helicases of superfamily II-like
Type IV
ORF Gene Most similar Specificity Name
 
chromosome 1
 
1068 GMP reductase
1069 R Spn9165McrCP (100% identity) Spn6565McrCP
1070 R Spn9165McrBP (100% identity) Spn6565McrBP
1071 translation factor
 
chromosome 1
 
1161 GMP reductase
1162 R Spn26365McrCP (97% identity) Spn0967McrCP
1163 R Spn26365McrBP (100% identity) Spn0967McrBP
1164 translation factor
 
chromosome 1
 
1132 GMP reductase
1133 R Spn5520McrCP (100% identity) Spn5675McrCP
1134 R SpnD141McrBP (100% identity) Spn5675McrBP
1135 translation factor
 
chromosome 1
 
1035 GMP reductase
1036 R Spn12495McrCP (98% identity) Spnd6c8McrCP
1037 R Spnp3McrBP (97% identity) Spnd6c8McrBP
1038 translation factor
 
chromosome 1
 
1118 GMP reductase
1119 R Spn9237McrCP (100% identity) Spnd6c6McrCP
1120 R Spn36169McrBP (100% identity) Spnd6c6McrBP
1121 translation factor
 
chromosome 1
 
1141 GMP reductase
1142 R SpnCGMcrCP (100% identity) Spn6c6McrCP
1143 R SpnINVMcrBP (100% identity) Spn6c6McrBP
1144 translation factor
 
chromosome 1
 
1052 GMP reductase
1053 R Spn12495McrCP (98% identity) Spnd6c8McrCP
1054 R Spnp3McrBP (97% identity) Spnd6c8McrBP
1055 Uncharacterised protein
 
chromosome 1
 
1160 GMP reductase
1161 R Spn8787McrCP (100% identity) Spn0967McrC2P
1162 R Spnp4McrBP (100% identity) Spn0967McrB2P
1163 Uncharacterised protein
 
chromosome 1
 
1149 GMP reductase
1150 R Spns521McrCP (99% identity) Spn6505McrCP
1151 R SpnN214McrBP (100% identity) Spn6505McrBP
1152 translation factor
 
chromosome 1
 
1139 GMP reductase
1140 R Spnp2McrCP (100% identity) Spn6816McrCP
1141 R Spn2112McrBP (100% identity) Spn6816McrBP
1142 translation factor
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