Salmonella enterica subsp. enterica serovar Typhimurium T000240-1 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium T000240-1 RM systems
Ref: Izumiya,H. et al. Antimicrob. Agents Chemother., DOI, DOI:10.1128/AAC.01215-10 (2010)
REBASE ref # 12285
| Sequence length: | GenBank #: | |
| Chromosome: | 4,954,814 bp | AP011957 |
| plasmid pSTMDT12_L: | 106,510 bp | AP011958 |
REBASE acronym: Sen0240
Org_num: 18168
All begin STMDT12_C, STMDT12_L
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 46510 | endoribonuclease SymE | |||
| 46520 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen0240ORF46530P |
| 46530 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen0240ORF46530P |
| 46540 | R | StyLT2IIP (100% identity) | GAGNNNNNNRTAYG | Sen0240ORF46530P |
| 46550 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20100 | 306 aa hypothetical protein | |||
| 20110 | V | very short patch repair protein | V.Sen0240DcmP | |
| 20120 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen0240DcmP |
| 20130 | 231 aa hypothetical protein | |||
| 34440 | DNA-binding protein Fis | |||
| 34450 | M | methyltransferase | ATGCAT | M.Sen0240ORF34450P |
| 34460 | periplasmic protein | |||
| 35380 | ribulose-phosphate 3-epimerase | |||
| 35390 | M | DNA adenine methylase | GATC | M.Sen0240DamP |
| 35400 | 425 aa hypothetical protein | |||
| 46210 | ABC transporter ATP-binding protein | |||
| 46220 | RM | StyUK1IV (100% identity) | GATCAG | Sen0240ORF46220P |
| 46230 | DNA repair ATPase | |||
| plasmid pSTMDT12_L | ||||
| 850 | 62 aa hypothetical protein | |||
| 860 | M | M.StyUK1ORFAP (100% identity) | M.Sen0240ORF860P | |
| 870 | cytoplasmic protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4180 | inner membrane protein | |||
| 4190 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen0240ORF4190P |
| 4200 | R | StyUK1IP (99% identity) | CAGAG | Sen0240ORF4190P |
| 4210 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 46540 | type I restriction enzyme EcoKI subunit R | |||
| 46550 | R | StyUK1MrrP (100% identity) | Sen0240MrrP | |
| 46560 | 95 aa hypothetical protein | |||
| 46540 | type I restriction enzyme EcoKI subunit R | |||
| 46550 | R | StyUK1MrrP (100% identity) | Sen0240Mrr3P | |
| 46560 | 95 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 27800 | 809 aa hypothetical protein | |||
| 27810 | M | M.StyLTORF13745P (100% identity) | GATC | M.Sen0240ORF27810P |
| 27820 | C4-type zinc finger protein, DksA/TraR family | |||