Escherichia coli U13A |
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Putative Escherichia coli U13A RM systems
Ref: Forde,B.M. et al. unpublished
REBASE ref # 28281
| Sequence length: | GenBank #: | |
| Chromosome: | 5,061,273 bp | CP035477 |
| plasmid pU13A_A: | 149,312 bp | CP035478 |
| plasmid pU13A_B: | 69,518 bp | CP035479 |
REBASE acronym: EcoU13A
Org_num: 33578
All begin U13A_, U13A_A, U13A_B
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 294 | 156 aa hypothetical protein | |||
| 295 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoU13AORF296P |
| 296 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoU13AORF296P |
| 297 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoU13AORF296P |
| 298 | 260 aa hypothetical protein | |||
| 4806 | Toxic protein SymE | |||
| 4807 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoU13AORF4809P |
| 4808 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoU13AORF4809P |
| 4809 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoU13AORF4809P |
| 4810 | Mrr restriction system protein | |||
| plasmid pU13A_A | ||||
| 66 | 167 aa hypothetical protein | |||
| 67 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoU13AORF69P |
| 68 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoU13AORF69P |
| 69 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoU13AORF69P |
| 70 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 979 | 71 aa hypothetical protein | |||
| 980 | M | M.KpnYN1ORFGP (89% identity) | M.EcoU13AORF980P | |
| 981 | HTH-type transcriptional regulator ImmR | |||
| 1425 | 65 aa hypothetical protein | |||
| 1426 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoU13AORF1426P |
| 1429 | Anti-adapter protein IraM | |||
| 2100 | inner membrane transporter YedA | |||
| 2101 | V | V.SflC32DcmP (74% identity) | V.EcoU13ADcmP | |
| 2102 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoU13ADcmP |
| 2103 | 231 aa hypothetical protein | |||
| 3492 | DNA-binding protein Fis | |||
| 3493 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoU13AORF3493P |
| 3494 | 59 aa hypothetical protein | |||
| 3612 | Ribulose-phosphate 3-epimerase | |||
| 3613 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoU13ADamP |
| 3614 | Cell division protein DamX | |||
| 4739 | 141 aa hypothetical protein | |||
| ??? | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoU13AORF4740P |
| 4741 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoU13AORF4740P |
| 4742 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoU13AORF4740P |
| 4743 | 428 aa hypothetical protein | |||
| plasmid pU13A_A | ||||
| 54 | 73 aa hypothetical protein | |||
| 55 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoU13AORF55P |
| 56 | 308 aa hypothetical protein | |||
| plasmid pU13A_B | ||||
| 22 | 308 aa hypothetical protein | |||
| 23 | M | M.Sfl7ORF23565P (100% identity) | M.EcoU13AORF23P | |
| 24 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4742 | 579 aa hypothetical protein | |||
| ??? | R | EcoU15AMcrCP (100% identity) | EcoU13AMcrCP | |
| 4744 | R | EcosS3McrBP (100% identity) | EcoU13AMcrBP | |
| 4745 | teichuronic acid biosynthesis | |||