Helicobacter pylori Hpbs3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpbs3 RM systems
Ref: Huang,Y. et al. unpublished
REBASE ref # 28144
Complete sequence: 1,514,674 bp
GenBank #: CP035106
REBASE acronym: Hpybs3
Org_num: 33282
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | type II restriction modification enzyme methyltransferase | |||
| ??? | S | S.Hpy1838CORF15500P (97% identity) | S.Hpybs3ORFA1P | |
| ??? | type II restriction endonuclease | |||
| ??? | restriction endonuclease subunit S | |||
| ??? | S | S.HpyK020ORF7220P (43% identity) | S.Hpybs3ORFB1P | |
| ??? | M | M.Hpyfe99ORF4915P (97% identity) | CRTANNNNNNNTC | M.Hpybs3ORFEP |
| ??? | S | S.HpyK116ORF4390P (98% identity) | CRTANNNNNNNTC | S.Hpybs3ORFEP |
| ??? | R | HpyTW09ORF4160P (97% identity) | CRTANNNNNNNTC | Hpybs3ORFEP |
| ??? | S | S.HpyCHN4IX (96% identity) | GANNNNNNNTAYG | S.Hpybs3ORFUP |
| ??? | R | Hpyfe85ORF4880P (95% identity) | Hpybs3ORFOP | |
| ??? | M | M.HpyF226ORFPP (97% identity) | M.Hpybs3ORFOP | |
| ??? | S | S.Hpybs2ORFRP (100% identity) | S.Hpybs3ORFOP | |
| ??? | R | Hpyfe65ORF7470P (97% identity) | CRTANNNNNNNTC | Hpybs3ORFKP |
| ??? | M | M.Hpyfe38ORF7575P (97% identity) | CRTANNNNNNNTC | M.Hpybs3ORFKP |
| ??? | S | S.Hpy192ORFRP (99% identity) | CRTANNNNNNNTC | S.Hpybs3ORFKP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | DEAD/DEAH box helicase | |||
| ??? | RM | HpyBR12ORF7095P (90% identity) | Hpybs3ORFE1P | |
| ??? | R | HpyU425IIIP (95% identity) | CCATC | Hpybs3ORFC1P |
| ??? | M | M1.Hpyfe55ORF155P (99% identity) | CCATC | M2.Hpybs3ORFC1P |
| ??? | M | M2.Hpyfe71ORF135P (100% identity) | CCATC | M1.Hpybs3ORFC1P |
| ??? | RM | Hpyfe51ORF270P (98% identity) | Hpybs3ORFZP | |
| ??? | restriction endonuclease subunit S | |||
| ??? | R | HNH endonuclease | CATG | Hpybs3ORFAP |
| ??? | M | M.HpyGU1CORFTP (97% identity) | CATG | M.Hpybs3ORFAP |
| ??? | M | M.HpyV005XIV (96% identity) | GCGC | M.Hpybs3ORFBP |
| ??? | R | Hpyfe37ORF2030P (99% identity) | TCNNGA | Hpybs3ORFCP |
| ??? | M | M.HpyT028XIII (99% identity) | TCNNGA | M.Hpybs3ORFCP |
| ??? | M | M.HpyPU001VIII (92% identity) | GTNNAC | M.Hpybs3ORFDP |
| ??? | R | Hpyfe23ORF2875P (98% identity) | GTNNAC | Hpybs3ORFDP |
| ??? | hypothetical protein | |||
| ??? | R | Hpybs2ORFZP (100% identity) | Hpybs3ORFWP | |
| ??? | M | M.Hpybs2ORFZP (100% identity) | M.Hpybs3ORFWP | |
| ??? | hypothetical protein | |||
| ??? | RM | Hpy30ORF661P (77% identity) | Hpybs3ORFTP | |
| ??? | R | Hpybs2ORFVP (99% identity) | Hpybs3ORFSP | |
| ??? | M | M.Hpybs2ORFVP (100% identity) | M.Hpybs3ORFSP | |
| ??? | R | Hpyfe79ORF4780P (98% identity) | ACGT | Hpybs3ORFPP |
| ??? | M | M.Hpy4105ORFEP (99% identity) | ACGT | M.Hpybs3ORFPP |
| ??? | GIY-YIG nuclease family protein | |||
| ??? | DNA cytosine methyltransferase | |||
| ??? | R | Hpyfe93ORF4895P (100% identity) | ACNGT | Hpybs3ORFQP |
| ??? | M | M.HpyV002II (99% identity) | ACNGT | M.Hpybs3ORFQP |
| ??? | modification methylase VspI domain protein | |||
| ??? | modification methylase VspI domain protein | |||
| ??? | M | M.HpyK050IV (98% identity) | ATTAAT | M.Hpybs3ORFRP |
| ??? | M | M.Hpybs2ORFGP (27% identity) | M.Hpybs3ORFJP | |
| ??? | R | HpyP96ORFKP (84% identity) | Hpybs3ORFJP | |
| ??? | M | M.Hpyfe102ORF5915P (99% identity) | CCGG | M.Hpybs3ORFFP |
| ??? | R | HpyOK304ORFAP (97% identity) | CCGG | Hpybs3ORFFP |
| ??? | M | M.HpyK101II (98% identity) | GATC | M.Hpybs3ORFGP |
| ??? | R | Hpy192ORFDP (96% identity) | GATC | Hpybs3ORFGP |
| ??? | M | M1.HpyK052ORF320P (98% identity) | CCTC | M1.Hpybs3ORFNP |
| ??? | DNA methyltransferase | |||
| ??? | RM | HpyUM023ORF590P (95% identity) | Hpybs3ORFIP | |
| ??? | R | HpyF75ORF37P (99% identity) | GAAGA | Hpybs3ORFLP |
| ??? | M | M1.Hpyfe64ORF7130P (98% identity) | GAAGA | M1.Hpybs3ORFLP |
| ??? | M | M2.HpyU423VI (95% identity) | GAAGA | M2.Hpybs3ORFLP |
| ??? | hypothetical protein | |||
| ??? | R | Hpyfe59ORF7460P (97% identity) | TGCA | Hpybs3ORFHP |
| ??? | M | M.HpySG12XI (99% identity) | TGCA | M.Hpybs3ORFHP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Hpyfe93ORF40P (97% identity) | M.Hpybs3ORFD1P | |
| ??? | R | Hpy256ORFSP (96% identity) | Hpybs3ORFD1P | |
| ??? | class I SAM-dependent DNA methyltransferase | |||
| ??? | R | HpyUM077ORF6630P (90% identity) | Hpybs3ORFYP | |
| ??? | M | M.HpyCHN3ORF6765P (95% identity) | M.Hpybs3ORFYP | |
| ??? | M | M.Hpybs2ORFYP (97% identity) | M.Hpybs3ORFVP | |
| ??? | restriction endonuclease | |||
| ??? | hypothetical protein | |||
| ??? | M | M.Hpybs2ORFYP (97% identity) | M.Hpybs3ORFXP | |
| ??? | R | Hpybs2ORFA1P (98% identity) | Hpybs3ORFXP | |
| ??? | DUF1887 family protein | |||
| ??? | M | M.Hpybs2ORFYP (93% identity) | M.Hpybs3ORFMP | |
| ??? | R | Hpyfe79ORF7170P (95% identity) | Hpybs3ORFMP | |