Helicobacter pylori Hpbs2 |
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Putative Helicobacter pylori Hpbs2 RM systems
Ref: Huang,Y. et al. unpublished
REBASE ref # 28144
Complete sequence: 1,535,248 bp
GenBank #: CP035105
REBASE acronym: Hpybs2
Org_num: 33297
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyISR8ORF4060P (82% identity) | M.Hpybs2ORFFP | |
| ??? | S | S.HpyBR13ORF4190P (98% identity) | S.Hpybs2ORFFP | |
| ??? | R | HpyT029ORF2685P (97% identity) | Hpybs2ORFFP | |
| ??? | S | S.HpyOK316ORFXP (69% identity) | S.Hpybs2ORFXP | |
| ??? | R | HpyIS8ORF2410P (88% identity) | Hpybs2ORFRP | |
| ??? | M | M.HpyR10ORF2150P (94% identity) | M.Hpybs2ORFRP | |
| ??? | S | S.Hpybs3ORFOP (100% identity) | S.Hpybs2ORFRP | |
| ??? | R | HpyUM038ORF880P (97% identity) | Hpybs2ORFLP | |
| ??? | M | M.HpyMA15XI (96% identity) | M.Hpybs2ORFLP | |
| ??? | S | S.HpyP77ORFNP (98% identity) | S.Hpybs2ORFLP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | DEAD/DEAH box helicase | |||
| ??? | RM | HpyPOR115ORF7015P (84% identity) | Hpybs2ORFE1P | |
| ??? | R | Hpyfe80ORF140P (97% identity) | CCATC | Hpybs2ORFAP |
| ??? | M | M2.HpyTW20VI (93% identity) | CCATC | M2.Hpybs2ORFAP |
| ??? | M | M2.Hpyfe49ORF135P (99% identity) | CCATC | M1.Hpybs2ORFAP |
| ??? | RM | Hpyfe93ORF280P (98% identity) | Hpybs2ORFMP | |
| ??? | S | S.Hpy17874ORF3814P (93% identity) | S.Hpybs2ORFMP | |
| ??? | R | HpyOK34ORFA1P (90% identity) | CATG | Hpybs2ORFB1P |
| ??? | M | M.Hpyfe83ORF1375P (98% identity) | CATG | M.Hpybs2ORFB1P |
| ??? | R | HpyOK304ORFA1P (98% identity) | TCNGA | Hpybs2ORFBP |
| ??? | M | M.HpyOK304ORFA1P (99% identity) | TCNGA | M.Hpybs2ORFBP |
| ??? | M | M.Hpyfe63ORF1855P (95% identity) | M.Hpybs2ORFCP | |
| ??? | R | Hpyfe37ORF2030P (100% identity) | TCNNGA | Hpybs2ORFDP |
| ??? | M | M.HpyOK302ORFYP (99% identity) | TCNNGA | M.Hpybs2ORFDP |
| ??? | M | M.HpyTW23X (81% identity) | M.Hpybs2ORFEP | |
| ??? | R | HpySG32ORF4810P (96% identity) | Hpybs2ORFEP | |
| ??? | hypothetical protein | |||
| ??? | R | Hpybs3ORFWP (100% identity) | Hpybs2ORFZP | |
| ??? | M | M.Hpybs3ORFWP (100% identity) | M.Hpybs2ORFZP | |
| ??? | hypothetical protein | |||
| ??? | R | Hpybs3ORFSP (99% identity) | GTAC | Hpybs2ORFVP |
| ??? | M | M.Hpybs3ORFSP (100% identity) | GTAC | M.Hpybs2ORFVP |
| ??? | R | hypothetical protein | Hpybs2ORFSP | |
| ??? | M | M.Hpy1136ORFJP (92% identity) | M.Hpybs2ORFSP | |
| ??? | GIY-YIG nuclease family protein | |||
| ??? | DNA cytosine methyltransferase | |||
| ??? | R | Hpyfe61ORF5010P (98% identity) | ACNGT | Hpybs2ORFTP |
| ??? | M | M.HpyTW17V (99% identity) | ACNGT | M.Hpybs2ORFTP |
| ??? | modification methylase VspI domain protein | |||
| ??? | modification methylase VspI domain protein | |||
| ??? | M | M.HpyK029II (97% identity) | ATTAAT | M.Hpybs2ORFUP |
| ??? | M | M.HpyTW04VII (100% identity) | CTNAG | M.Hpybs2ORFGP |
| ??? | R | HpyP98ORFLP (97% identity) | CTNAG | Hpybs2ORFGP |
| ??? | M | M.Hpyfe93ORF5875P (100% identity) | CCGG | M.Hpybs2ORFHP |
| ??? | R | Hpy271ORFNP (98% identity) | CCGG | Hpybs2ORFHP |
| ??? | DNA -methyltransferase | |||
| ??? | endonuclease MjaVIP | |||
| ??? | M | M.HpyK046II (97% identity) | TCGA | M.Hpybs2ORFIP |
| ??? | M | M.Hpy274ORF182P (97% identity) | GATC | M.Hpybs2ORFJP |
| ??? | R | Hpyfe13ORF6650P (95% identity) | GATC | Hpybs2ORFJP |
| ??? | M | M1.HpyTW05IX (98% identity) | CCTC | M1.Hpybs2ORFQP |
| ??? | DNA methyltransferase | |||
| ??? | RM | HpyK115ORF265P (88% identity) | Hpybs2ORFPP | |
| ??? | R | Hpyfe6ORF6865P (98% identity) | GAAGA | Hpybs2ORFNP |
| ??? | M | M1.Hpyfe64ORF7130P (100% identity) | GAAGA | M1.Hpybs2ORFNP |
| ??? | M | M2.Hpyfe23ORF7115P (95% identity) | GAAGA | M2.Hpybs2ORFNP |
| ??? | hypothetical protein | |||
| ??? | R | HpyK043ORF7475P (98% identity) | TGCA | Hpybs2ORFKP |
| ??? | M | M.HpyTW01III (99% identity) | TGCA | M.Hpybs2ORFKP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyK022ORF7075P (97% identity) | M.Hpybs2ORFD1P | |
| ??? | R | Hpyfe32ORF40P (95% identity) | Hpybs2ORFD1P | |
| ??? | class I SAM-dependent DNA methyltransferase | |||
| ??? | R | HpyK114ORF6550P (94% identity) | Hpybs2ORFC1P | |
| ??? | M | M.HpyH137ORF670P (94% identity) | M.Hpybs2ORFC1P | |
| ??? | M | M.Hpybs2ORFOP (100% identity) | M.Hpybs2ORFYP | |
| ??? | restriction endonuclease | |||
| ??? | Dam family site-specific DNA--methyltransferase | |||
| ??? | M | M.Hpybs3ORFMP (100% identity) | M.Hpybs2ORFA1P | |
| ??? | R | Hpybs2ORFOP (99% identity) | Hpybs2ORFA1P | |
| ??? | DUF1887 family protein | |||
| ??? | M | M.Hpybs2ORFYP (100% identity) | M.Hpybs2ORFOP | |
| ??? | R | Hpybs2ORFA1P (99% identity) | Hpybs2ORFOP | |