Helicobacter pylori PMSS1 |
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Putative Helicobacter pylori PMSS1 RM systems
Ref: Mimuro,H. et al. unpublished
REBASE ref # 28141
Complete sequence: 1,603,093 bp
GenBank #: AP017633
REBASE acronym: HpyMSS1
Org_num: 33286
All begin HPPMSS1_c
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 98 | formyltetrahydrofolate deformylase | |||
| 99 | S | S.Hpyoh1ORF1965P (100% identity) | S.HpyMSS1ORF99P | |
| 100 | 72 aa hypothetical protein | |||
| 883 | outer membrane protein | |||
| 884 | S | S.Hpyoh1ORF5590P (100% identity) | S.HpyMSS1ORF886P | |
| 885 | 258 aa hypothetical protein | |||
| ??? | M | M.HpyU105ORF3825P (100% identity) | M.HpyMSS1ORF886P | |
| 887 | cadmium, zinc and cobalt-transporting ATPase | |||
| 940 | hydroxyethylthiazole kinase | |||
| 941 | R | Hpyoh1ORF5270P (100% identity) | HpyMSS1ORF943P | |
| 942 | S | S.Hpyoh1ORF5270P (100% identity) | S.HpyMSS1ORF943P | |
| ??? | M | M.HpySS1DORF484BP (100% identity) | M.HpyMSS1ORF943BP | |
| 944 | transposase | |||
| 945 | hypothetical protein | |||
| 946 | M | M.HpySS1DORF484AP (100% identity) | M.HpyMSS1ORF943AP | |
| 947 | modification methylase HaeIII | |||
| 1002 | hypothetical protein | |||
| ??? | R | HpyAMORF4990P (100% identity) | HpyMSS1ORF1006P | |
| 1006 | M | M.Hpyoh1ORF4975P (100% identity) | M.HpyMSS1ORF1006P | |
| 1007 | S | S.Hpyoh1ORF4975P (100% identity) | S.HpyMSS1ORF1006P | |
| 1008 | polyphosphate kinase | |||
| 1498 | 235 aa hypothetical protein | |||
| 1499 | R | Hpyoh1ORF2485P (100% identity) | HpyMSS1ORFBP | |
| ??? | M | M.Hpyoh1ORF2485P (100% identity) | M.HpyMSS1ORFBP | |
| 1502 | S | S.Hpyoh1ORF2485P (100% identity) | S.HpyMSS1ORFBP | |
| 1503 | thymidylate synthase ThyX | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11 | 714 aa hypothetical protein | |||
| 12 | RM | Hpyoh1ORF2400P (100% identity) | HpyMSS1ORF12P | |
| 13 | 179 aa hypothetical protein | |||
| 30 | helicobacter outer membrane protein | |||
| 31 | R | Hpyoh1ORF2300P (100% identity) | CCATC | HpyMSS1ORF32P |
| ??? | M | M2.Hpyoh1ORF2300P (93% identity) | CCATC | M1.HpyMSS1ORF32P |
| 33 | M | M1.Hpyoh1ORF2300P (100% identity) | CCATC | M2.HpyMSS1ORF32P |
| 34 | permease YjgP/YjgQ family protein | |||
| 59 | 191 aa hypothetical protein | |||
| 60 | RM | Hpyoh1ORF2165P (100% identity) | HpyMSS1ORF60P | |
| 61 | S | S.Hpyoh1ORF2165P (100% identity) | S.HpyMSS1ORF60P | |
| 62 | DNA polymerase I | |||
| 155 | nicotinate-nucleotide | |||
| 156 | RM | Hpyoh1ORF1675P (100% identity) | HpyMSS1ORF156P | |
| 157 | modification methylase DpnIIB | |||
| 156 | N-6 DNA Methylase | |||
| 157 | M | M.Hpyoh1ORF1670P (100% identity) | GANTC | M.HpyMSS1ORF157P |
| 158 | R | Hpyoh1ORF1670P (100% identity) | GANTC | HpyMSS1ORF157P |
| 159 | carboxy-terminal processing protease | |||
| 296 | helicobacter pylori IceA2 protein | |||
| 297 | M | M.HpySS1DORF1159P (100% identity) | CATG | M.HpyMSS1ORF297P |
| 298 | phosphoglycolate phosphatase | |||
| 382 | anti-sigma-28 factor, FlgM | |||
| 383 | M | M.Hpyoh1ORF495P (100% identity) | M.HpyMSS1ORF383P | |
| 384 | R | Hpyoh1ORF495P (100% identity) | HpyMSS1ORF383P | |
| 385 | 144 aa hypothetical protein | |||
| 418 | 197 aa hypothetical protein | |||
| 419 | R | Hpyoh1ORF6430P (100% identity) | TCNNGA | HpyMSS1ORF420P |
| 420 | M | M.Hpyoh1ORF6430P (100% identity) | TCNNGA | M.HpyMSS1ORF420P |
| 421 | biotin carboxylase | |||
| 565 | helicobacter outer membrane protein | |||
| 566 | RM | Hpyoh1ORF7185P (51% identity) | HpyMSS1ORF566BP | |
| 567 | RM | HpySS1DORF875AP (100% identity) | HpyMSS1ORF566AP | |
| 568 | anaerobic glycerol-3-phosphate | |||
| 735 | murein DD-endopeptidase MepM | |||
| ??? | R | HpySS1DORF695P (100% identity) | GTAC | HpyMSS1ORF737P |
| ??? | M | M.HpySS1DORF695P (100% identity) | GTAC | M.HpyMSS1ORF737P |
| 738 | DNA polymerase III subunit beta | |||
| 782 | flagellar hook protein FlgE | |||
| 783 | R | Hpyoh1ORF6110P (100% identity) | GTNNAC | HpyMSS1ORF784P |
| ??? | M | M.Hpyoh1ORF6110P (93% identity) | GTNNAC | M.HpyMSS1ORF784P |
| 785 | DNA helicase II | |||
| 946 | hypothetical protein | |||
| 947 | M | M.Hpyoh1ORF5265P (100% identity) | M.HpyMSS1ORF947P | |
| ??? | R | HpySS1DORF483P (100% identity) | HpyMSS1ORF947P | |
| 949 | phosphatidylglycerophosphatase B | |||
| 982 | catalase-related peroxidase precursor | |||
| 983 | R | Hpyoh1ORF5085P (100% identity) | ACGT | HpyMSS1ORF984P |
| 984 | M | M.Hpyoh1ORF5085P (100% identity) | ACGT | M.HpyMSS1ORF984P |
| 985 | 204 aa hypothetical protein | |||
| 984 | BsuMI modification methylase | |||
| 985 | R | Hpyoh1ORF5075P (100% identity) | ACNGT | HpyMSS1ORF986P |
| 986 | M | M.Hpyoh1ORF5075P (100% identity) | ACNGT | M.HpyMSS1ORF986P |
| 987 | GTP-binding protein TypA/BipA | |||
| 988 | 282 aa hypothetical protein | |||
| 989 | M | M.Hpyoh1ORF5060P (100% identity) | ATTAAT | M.HpyMSS1ORF989P |
| 990 | helicobacter outer membrane protein | |||
| 1091 | 156 aa hypothetical protein | |||
| 1092 | M | M.Hpyoh1ORF4535P (100% identity) | M.HpyMSS1ORF1092P | |
| 1093 | elongation factor 4 | |||
| 1180 | hypothetical protein | |||
| 1181 | M | M1.HpySS1DORF249P (100% identity) | TCGA | M.HpyMSS1ORF1181P |
| 1182 | exodeoxyribonuclease 7 large subunit | |||
| 1342 | glycosyl transferase family 11 | |||
| 1343 | M | M.Hpyoh1ORF3300P (100% identity) | GATC | M.HpyMSS1ORF1343P |
| 1344 | R | Hpyoh1ORF3300P (100% identity) | GATC | HpyMSS1ORF1343P |
| 1345 | malonyl CoA-acyl carrier protein transacylase | |||
| 1379 | sodium/proline symporter | |||
| 1380 | M | M2.HpySS1DORF50P (100% identity) | CCTC | M2.HpyMSS1ORF1380P |
| 1381 | M | M1.Hpyoh1ORF3110P (100% identity) | CCTC | M1.HpyMSS1ORF1380P |
| 1382 | agmatine deiminase | |||
| 1480 | hypothetical protein | |||
| 1481 | M | M.Hpyoh1ORF2575P (100% identity) | TGCA | M.HpyMSS1ORF1481P |
| 1482 | hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyoh1ORF2415P (100% identity) | M.HpyMSS1ORFCP | |
| 10 | R | Hpyoh1ORF2415P (100% identity) | HpyMSS1ORFCP | |
| 11 | 714 aa hypothetical protein | |||
| 128 | biotin synthase | |||
| 129 | R | HpySS1DORF1326P (100% identity) | HpyMSS1ORF130P | |
| 130 | M | M.Hpyoh1ORF1800P (100% identity) | M.HpyMSS1ORF130P | |
| 131 | DNA/RNA non-specific endonuclease | |||
| 141 | rod shape-determining protein MreC | |||
| 142 | R | Hpyoh1ORF1735P (100% identity) | HpyMSS1ORFAP | |
| ??? | M | M.Hpyoh1ORF1735P (100% identity) | M.HpyMSS1ORFAP | |
| 145 | transcriptional regulatory protein QseB | |||