Helicobacter pylori ATCC 43504 |
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Putative Helicobacter pylori ATCC 43504 RM systems
Ref: Mimuro,H. et al. unpublished
REBASE ref # 28141
Complete sequence: 1,680,829 bp
GenBank #: AP017632
REBASE acronym: Hpy43504
Org_num: 9214
All begin HPATCC43504_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 123 | 262 aa hypothetical protein | |||
| 124 | S | S.HpyS298ORF4740P (100% identity) | S.Hpy43504ORF126P | |
| 125 | 258 aa hypothetical protein | |||
| 126 | M | M.HpyS298ORF4740P (100% identity) | M.Hpy43504ORF126P | |
| 127 | R | HpyS298ORF4740P (99% identity) | Hpy43504ORF126P | |
| 128 | 235 aa hypothetical protein | |||
| 986 | outer membrane protein | |||
| 987 | S | S.HpyS298ORF860P (100% identity) | S.Hpy43504ORF987P | |
| 988 | cadmium, zinc and cobalt-transporting ATPase | |||
| 1041 | hydroxyethylthiazole kinase | |||
| 1042 | R | HpyS298ORF1160P (100% identity) | Hpy43504ORF1044P | |
| 1043 | S | S.HpyS298ORF1160P (100% identity) | S.Hpy43504ORF1044P | |
| 1044 | M | M.HpyS298ORF1160P (100% identity) | M.Hpy43504ORF1044P | |
| 1045 | phosphatidylglycerophosphatase B | |||
| 1300 | hypothetical protein | |||
| ??? | R | HpyS298ORF2550P (100% identity) | Hpy43504ORF1303P | |
| 1303 | M | M.HpyS298ORF2550P (100% identity) | M.Hpy43504ORF1303P | |
| 1304 | S | S.HpySP16ORF4340P (28% identity) | S1.Hpy43504ORF1303P | |
| 1305 | S | S.HpyS298ORF2550P (62% identity) | S2.Hpy43504ORF1303P | |
| 1306 | polyphosphate kinase | |||
| 1581 | hypothetical protein | |||
| 1582 | S | S1.HpyS298ORF3970P (100% identity) | S1.Hpy43504ORFCP | |
| 1583 | S | S2.HpyS298ORF3970P (95% identity) | S2.Hpy43504ORFCP | |
| 1584 | formyltetrahydrofolate deformylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | hypothetical protein | |||
| 11 | RM | HpyS298ORF4175P (100% identity) | Hpy43504ORF11P | |
| 12 | hypothetical protein | |||
| 28 | helicobacter outer membrane protein | |||
| 29 | R | HpyS298VIIP (82% identity) | CCATC | Hpy43504ORF31P |
| 30 | 81 aa hypothetical protein | |||
| 31 | M | M2.HpyS298VII (100% identity) | CCATC | M2.Hpy43504ORF31P |
| 32 | M | M1.HpyS298VII (100% identity) | CCATC | M1.Hpy43504ORF31P |
| 33 | permease YjgP/YjgQ family protein | |||
| 58 | 191 aa hypothetical protein | |||
| 59 | RM | HpyS298ORF4410P (100% identity) | Hpy43504ORF59P | |
| 60 | S | S.HpyS298ORF4410P (100% identity) | S.Hpy43504ORF59P | |
| 61 | DNA polymerase I | |||
| 241 | agmatine deiminase | |||
| 242 | M | M1.HpyS298VIII (100% identity) | CCTC | M1.Hpy43504ORF242P |
| 243 | M | M2.HpyS298VIIIP (100% identity) | CCTC | M2.Hpy43504ORF242P |
| 244 | R | HpyS298VIIIP (100% identity) | CCTC | Hpy43504ORF242P |
| 245 | modification methylase MboII | |||
| 244 | hypothetical protein | |||
| 245 | M | M.HpyKH4ORFTP (100% identity) | GTSAC | M.Hpy43504ORF245P |
| ??? | R | HpyC11637ORF252P (100% identity) | GTSAC | Hpy43504ORF245P |
| 247 | hypothetical protein | |||
| 287 | 325 aa hypothetical protein | |||
| 288 | M | M.HpyS298III (100% identity) | GATC | M.Hpy43504ORF288P |
| 289 | glycosyl transferase family 11 | |||
| 370 | elongation factor P | |||
| 371 | M | M.HpyS298ORF6065P (100% identity) | M.Hpy43504ORF371P | |
| 372 | hypothetical protein | |||
| 373 | type-2 restriction enzyme BsuMI component YdiS | |||
| 374 | R | R2.HpyS298ORF6065P (100% identity) | Hpy43504ORF371P | |
| 375 | pseudaminic acid synthase | |||
| 587 | helicobacter pylori IceA2 protein | |||
| 588 | M | M.HpyS298I (100% identity) | CATG | M.Hpy43504ORF588P |
| 589 | haloacid dehalogenase-like hydrolase | |||
| 676 | anti-sigma-28 factor, FlgM | |||
| 677 | M | M.HpyC11637ORF697P (100% identity) | GCGC | M.Hpy43504ORF677P |
| 678 | hypothetical protein | |||
| 694 | DNA polymerase III subunit beta | |||
| 695 | M | M.HpyS298ORF7760P (100% identity) | GTAC | M.Hpy43504ORF695P |
| 696 | R | HpyS298ORF7760P (100% identity) | GTAC | Hpy43504ORF695P |
| 697 | murein DD-endopeptidase MepM | |||
| 863 | anaerobic glycerol-3-phosphate | |||
| ??? | RM | HpyS298ORF250P (100% identity) | Hpy43504ORFBP | |
| 866 | 175 aa hypothetical protein | |||
| 1100 | flagellar hook protein FlgE | |||
| 1101 | R | HpyS298IVP (100% identity) | GTNNAC | Hpy43504ORF1102P |
| 1102 | M | M.HpyS298IV (100% identity) | GTNNAC | M.Hpy43504ORF1102P |
| 1103 | DNA helicase II | |||
| 1239 | 177 aa hypothetical protein | |||
| 1240 | M | 110 aa hypothetical protein | M.Hpy43504ORF1240P | |
| 1241 | transposase | |||
| 1242 | transposase IS200 like protein | |||
| 1243 | M | 228 aa hypothetical protein | M.Hpy43504ORF1243P | |
| ??? | R | HpyS298ORF2235P (100% identity) | TCNNGA | Hpy43504ORF1243P |
| 1246 | 212 aa hypothetical protein | |||
| 1279 | catalase-related peroxidase precursor | |||
| ??? | R | HpyS298ORF2445P (100% identity) | Hpy43504ORF1281P | |
| 1281 | M | M.HpyS298ORF2445P (100% identity) | M.Hpy43504ORF1281P | |
| 1282 | hypothetical protein | |||
| 1281 | modification methylase HaeIII | |||
| 1282 | R | HpyS298IIP (100% identity) | ACNGT | Hpy43504ORF1283P |
| 1283 | M | M.HpyS298II (100% identity) | ACNGT | M.Hpy43504ORF1283P |
| 1284 | GTP-binding protein TypA/BipA | |||
| 1285 | hypothetical protein | |||
| ??? | M | M.HpyS298V (100% identity) | M.Hpy43504ORF1286P | |
| 1288 | helicobacter outer membrane protein | |||
| 1431 | 122 aa hypothetical protein | |||
| 1432 | M | M.HpyS298VI (100% identity) | CTNAG | M.Hpy43504ORF1432P |
| 1433 | R | HpySW33VP (100% identity) | CTNAG | Hpy43504ORF1432P |
| 1434 | peptidoglycan deacetylase | |||
| 1480 | chaperone protein ClpB | |||
| 1481 | M | M.HpyS298ORF3450P (100% identity) | CCGG | M.Hpy43504ORF1481P |
| ??? | R | HpyS298ORF3450P (100% identity) | CCGG | Hpy43504ORF1481P |
| 1484 | 51 aa hypothetical protein | |||
| 1485 | 161 aa hypothetical protein | |||
| 1486 | M | M.HpyS298IX (100% identity) | TCGA | M.Hpy43504ORF1486P |
| 1487 | exodeoxyribonuclease 7 large subunit | |||
| 1527 | CtpA-like serine protease | |||
| 1528 | RM | HpyS298ORF3680P (92% identity) | Hpy43504ORF1528P | |
| 1529 | nicotinate-nucleotide | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyS298ORF4160P (100% identity) | M.Hpy43504ORFEP | |
| ??? | R | HpyS298ORF4160P (100% identity) | Hpy43504ORFEP | |
| 11 | modification methylase PaeR7I | |||
| 1539 | transcriptional regulatory protein QseB | |||
| ??? | M | M.HpyS298ORF3740P (100% identity) | M.Hpy43504ORF1541P | |
| 1542 | R | HpyS298ORF3740P (100% identity) | Hpy43504ORF1541P | |
| 1543 | rod shape-determining protein MreC | |||
| 1553 | DNA/RNA non-specific endonuclease | |||
| ??? | M | M.HpyS298ORF3805P (100% identity) | M.Hpy43504ORFDP | |
| ??? | R | HpyS298ORF3805P (100% identity) | Hpy43504ORFDP | |
| 1557 | biotin synthase | |||