Streptomyces species AC1-42T |
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Putative Streptomyces species AC1-42T RM systems
Ref: De Leon,M.P. et al. unpublished
REBASE ref # 27918
Contig set: 7,273,138 bp
GenBank #: QKWX00000000 (NZ_QKWX00000000)
REBASE acronym: Ssp142T
Org_num: 32770
All begin DNK55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 28515 | MarR family transcriptional regulator | |||
| 28520 | R | Ssp142WIP (100% identity) | AGCANNNNNNTCGC | Ssp142TIP |
| 28525 | S | S.Ssp142WI (100% identity) | AGCANNNNNNTCGC | S.Ssp142TI |
| 28530 | M | M.Ssp142WI (100% identity) | AGCANNNNNNTCGC | M.Ssp142TI |
| 28535 | 694 aa hypothetical protein | |||
| 5875 | 252 aa hypothetical protein | |||
| 5880 | R | Ssp142WIIP (100% identity) | Ssp142TORF5915P | |
| 5885 | 68 aa hypothetical protein | |||
| 5890 | XRE family transcriptional regulator | |||
| 5895 | DUF397 domain-containing protein | |||
| 5900 | 46 aa hypothetical protein | |||
| 5905 | IS5/IS1182 family transposase | |||
| ??? | S | S.Ssp142WII (64% identity) | S1.Ssp142TORF5915P | |
| 5910 | IS5/IS1182 family transposase | |||
| ??? | S | S.Ssp142WII (35% identity) | S2.Ssp142TORF5915P | |
| 5915 | M | M.Ssp142WII (100% identity) | M.Ssp142TORF5915P | |
| 5920 | 311 aa hypothetical protein | |||
| 19860 | DUF397 domain-containing protein | |||
| 19865 | M | M.Ssp142WORF11575P (100% identity) | M.Ssp142TORF19865P | |
| 19870 | S | S.Ssp142WORF11575P (100% identity) | S.Ssp142TORF19865P | |
| ??? | R | Ssp142WORF11575P (100% identity) | Ssp142TORF19865P | |
| 19880 | TldD/PmbA family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32980 | 138 aa hypothetical protein | |||
| 32985 | M | M.Ssp2950ORF41940P (76% identity) | M.Ssp142TORF32985P | |
| 32990 | 178 aa hypothetical protein | |||
| 33000 | 153 aa hypothetical protein | |||
| 33005 | M | M.Ssp2950ORF41960P (83% identity) | M.Ssp142TORF33005P | |
| 33010 | 172 aa hypothetical protein | |||
| 25250 | endonuclease | |||
| ??? | M | M2.Ssp142WORF6295P (64% identity) | M1.Ssp142TORF25260P | |
| 25255 | V | V.Ssp142WORF6295P (100% identity) | V.Ssp142TORF25260P | |
| ??? | M | M1.Ssp142WORF6295P (73% identity) | M2.Ssp142TORF25260P | |
| 25270 | 298 aa hypothetical protein | |||
| 1230 | alpha/beta hydrolase | |||
| 1235 | M | M.Ssp142WORF31450P (98% identity) | M.Ssp142TORF1235P | |
| 1240 | SAM-dependent DNA methyltransferase | |||
| 1235 | SAM-dependent methyltransferase | |||
| 1240 | RM | Ssp142WORF31445P (100% identity) | Ssp142TORF1240P | |
| 1245 | helicase | |||
| 26805 | 208 aa hypothetical protein | |||
| 26810 | M | M.Ssp142WORF4765P (100% identity) | M.Ssp142TORF26810P | |
| 26815 | 288 aa hypothetical protein | |||
| 2115 | malate synthase A | |||
| 2120 | M | M.Ssp142WORF30560P (100% identity) | M.Ssp142TORF2120P | |
| 2125 | DEAD/DEAH box helicase | |||
| 2130 | helicase | |||
| 2135 | RM | Ssp142WORF30545P (100% identity) | Ssp142TORF2135P | |
| 2140 | 584 aa hypothetical protein | |||
| 27695 | DUF397 domain-containing protein | |||
| 27700 | RM | Ssp142WORF3870P (100% identity) | Ssp142TORF27700P | |
| 27705 | 488 aa hypothetical protein | |||
| 29320 | IS5/IS1182 family transposase | |||
| 29325 | R | Ssp142WIIIP (100% identity) | CTGCAG | Ssp142TIIP |
| 29330 | M | M.Ssp142WIII (100% identity) | CTGCAG | M.Ssp142TII |
| 29335 | transcriptional regulator | |||
| 18250 | 62 aa hypothetical protein | |||
| 18255 | V | V.Ssp142WORF13180P (100% identity) | V.Ssp142TORF18260P | |
| 18260 | M | M.SspINR7ORF16155P (100% identity) | M.Ssp142TORF18260P | |
| 18265 | 816 aa hypothetical protein | |||
| 18275 | proline dehydrogenase | |||
| 18280 | M | M.SspINR7ORF16180P (100% identity) | M.Ssp142TORF18280P | |
| 18285 | 375 aa hypothetical protein | |||
| 6055 | 62 aa hypothetical protein | |||
| 6060 | V | V.Ssp142WORF26615P (100% identity) | V.Ssp142TORF6040P | |
| 6065 | DNA cytosine methyltransferase | |||
| 6060 | very short patch repair endonuclease | |||
| 6065 | M | M.Ssp142WORF26615P (100% identity) | M.Ssp142TORF6065P | |
| 6070 | 307 aa hypothetical protein | |||
| 6070 | 307 aa hypothetical protein | |||
| 6075 | M | M.Ssp142WORF26605P (100% identity) | M.Ssp142TORF6075P | |
| 6080 | 377 aa hypothetical protein | |||
| 7135 | DUF397 domain-containing protein | |||
| 7140 | RM | Ssp142WORF25540P (100% identity) | Ssp142TORF7140P | |
| 7145 | helicase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2220 | RNA polymerase subunit sigma | |||
| 2225 | R | Ssp142WMcrBP (100% identity) | Ssp142TMcrBP | |
| 2230 | R | Ssp142WMcrCP (100% identity) | Ssp142TMcrCP | |
| 2235 | sucrase ferredoxin | |||