Helicobacter pylori NCTC12823 |
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Putative Helicobacter pylori NCTC12823 RM systems
Ref:
REBASE ref # 22501
Complete sequence: 1,632,224 bp
GenBank #: LR134519
REBASE acronym: Hpy12823
Org_num: 32639
All begin NCTC12823_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 76 | Uncharacterised protein | |||
| 77 | S | S.HpyJ028ORF6850P (85% identity) | S.Hpy12823ORF78P | |
| ??? | M | M.HpyT022IV (93% identity) | M.Hpy12823ORF78P | |
| 80 | R | HpyL028ORF6920P (95% identity) | Hpy12823ORF78P | |
| 81 | metal-dependent hydrolase | |||
| 587 | polyphosphate kinase | |||
| 589 | S | S.HpySWT11ORF5135P (99% identity) | S.Hpy12823ORF590P | |
| 590 | M | M.HpyPO12ORF2135P (96% identity) | M.Hpy12823ORF590P | |
| ??? | R | HpySW13ORF2185P (94% identity) | Hpy12823ORF590P | |
| 593 | Uncharacterized protein conserved in bacteria | |||
| 918 | outer membrane protein | |||
| 919 | S | S.HpyP009ORF2125P (94% identity) | S.Hpy12823ORF919P | |
| 920 | heavy-metal cation-transporting P-type | |||
| 974 | hydroxyethylthiazole kinase | |||
| 975 | R | HpySW34ORF2475P (96% identity) | Hpy12823ORFAP | |
| 976 | S | S.HpyME45XVI (95% identity) | S.Hpy12823ORFAP | |
| ??? | M | M.HpySW21XIII (96% identity) | M.Hpy12823ORFAP | |
| 978 | phosphatidic acid phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13 | cytoplasmic protein | |||
| 14 | RM | Hpyfe81ORF55P (87% identity) | Hpy12823ORF14P | |
| 15 | transcription elongation factor NusA | |||
| 55 | HP1473-transformation associated protein | |||
| 56 | RM | HpyPO108ORF7185P (98% identity) | Hpy12823ORF56P | |
| ??? | S | S.HpyNCI39ORFVP (95% identity) | S.Hpy12823ORF56P | |
| 59 | DNA polymerase I | |||
| 95 | Uncharacterised protein | |||
| ??? | M | M.HpyH010XI (98% identity) | TGCA | M.Hpy12823XII |
| ??? | R | HpyIS3XP (98% identity) | TGCA | Hpy12823XIIP |
| 100 | ubiquinol-cytochrome c reductase cytochrome c1 | |||
| 202 | Agmatine deiminase | |||
| 203 | M | M1.HpyG8GORFHP (98% identity) | CCTC | M1.Hpy12823V |
| 204 | M | M2.HpySW19VIIP (98% identity) | CCTC | M2.Hpy12823VP |
| 205 | R | HpyIN10IVP (94% identity) | CCTC | Hpy12823VP |
| 206 | type II DNA modification enzyme | |||
| 205 | restriction endonuclease | |||
| 206 | M | M.HpyKH4ORFTP (100% identity) | GTSAC | M.Hpy12823X |
| 207 | R | HpyG012IVP (99% identity) | GTSAC | Hpy12823XP |
| 208 | type II R-M system restriction endonuclease | |||
| 207 | type II restriction endonuclease | |||
| 208 | R | HpyP103VIIP (97% identity) | Hpy12823ORF209P | |
| 209 | M | adenine/cytosine DNA methyltransferase | M1.Hpy12823ORF209P | |
| 210 | M | M.HpyGE15ORF305P (67% identity) | M2.Hpy12823ORF209P | |
| 211 | SSS family proline:sodium (Na+) symporter | |||
| 249 | malonyl CoA-acyl carrier protein transacylase | |||
| 251 | R | HpySP16IIP (96% identity) | GATC | Hpy12823VIIIP |
| 252 | M | M.HpyGE12VIII (97% identity) | GATC | M.Hpy12823VIII |
| 253 | alpha-1,2-fucosyltransferase | |||
| 417 | exodeoxyribonuclease VII large subunit | |||
| 418 | M | M.HpyIS6XI (99% identity) | TCGA | M.Hpy12823XI |
| 419 | endonuclease MjaVIP | |||
| 418 | DNA methyltransferase | |||
| 419 | R | Hpy1147ORF4015P (95% identity) | CCGG | Hpy12823IVP |
| 420 | M | M.HpyL7ORF1110P (98% identity) | CCGG | M.Hpy12823IV |
| 421 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 605 | outer membrane protein HopK | |||
| 606 | M | M.HpyU436II (96% identity) | ATTAAT | M.Hpy12823III |
| 607 | DD-heptosyltransferase | |||
| 608 | GTP-binding protein | |||
| 609 | M | M.HpyL035II (98% identity) | ACNGT | M.Hpy12823II |
| 610 | R | HpyME41ORF2300P (83% identity) | ACNGT | Hpy12823IIP |
| 611 | type II DNA modification enzyme | |||
| 610 | type II restriction endonuclease | |||
| 611 | M | M.HpySW16ORF3615P (98% identity) | ACGT | M.Hpy12823ORF611P |
| ??? | R | HpyPO108ORF4480P (99% identity) | ACGT | Hpy12823ORF611P |
| 614 | Catalase like protein | |||
| 630 | DNA polymerase III subunit beta | |||
| ??? | M | M.HpySP610VI (97% identity) | M.Hpy12823ORF632P | |
| ??? | R | HpyIS2XIIP (92% identity) | Hpy12823ORF632P | |
| 636 | metalloendopeptidase like protein | |||
| 799 | anaerobic glycerol-3-phosphate | |||
| ??? | RM | HpyS299ORF2770P (91% identity) | Hpy12823ORF800P | |
| 802 | outer membrane protein 9 | |||
| 1038 | flagellar hook protein FlgE | |||
| 1039 | R | HpyNP09XIIIP (98% identity) | GTNNAC | Hpy12823IXP |
| 1040 | M | M.HpyAL6X (95% identity) | GTNNAC | M.Hpy12823IX |
| 1041 | ATP-dependent DNA helicase | |||
| 1184 | biotin carboxylase | |||
| ??? | M | M.HpyBG6ORF4905P (98% identity) | M.Hpy12823ORF1185P | |
| ??? | R | HpyAR9ORF5265P (93% identity) | Hpy12823ORF1185P | |
| 1189 | Laminin subunit alpha-2 precursor | |||
| 1225 | Uncharacterised protein | |||
| 1226 | M | M.HpyPO08XVII (95% identity) | M.Hpy12823ORF1226P | |
| 1227 | negative regulator of flagellin synthesis FlgM | |||
| 1319 | haloacid dehalogenase/epoxide hydrolase | |||
| 1320 | M | M.Hpy25AEK9ORFBP (94% identity) | CATG | M.Hpy12823I |
| 1321 | integrase/recombinase (XERCD family) | |||
| 1503 | carboxyl-terminal protease | |||
| 1504 | R | HpyPO108VP (95% identity) | GANTC | Hpy12823VIIP |
| 1505 | M | M.HpySP07III (99% identity) | GANTC | M.Hpy12823VII |
| 1506 | adenine specific DNA methyltransferase | |||
| 1505 | adenine specific DNA methyltransferase | |||
| 1506 | RM | HpyBR25ORF6675P (91% identity) | Hpy12823ORF1506P | |
| 1507 | nicotinate-nucleotide pyrophosphorylase | |||
| 1517 | two-component regulator | |||
| ??? | R | Hpy75ORF6865P (97% identity) | GAAGA | Hpy12823VIP |
| 1520 | M | M1.Hpyfe3ORF6900P (98% identity) | GAAGA | M1.Hpy12823VI |
| 1521 | M | M1.HpyUM084ORF8285P (99% identity) | GAAGA | M2.Hpy12823VI |
| 1522 | adenine-specific DNA methylase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyLI12ORF7260P (96% identity) | M.Hpy12823ORF9P | |
| 12 | R | HpyCA26ORF7000P (96% identity) | Hpy12823ORF9P | |
| 13 | cytoplasmic protein | |||
| 1521 | modification methylase mjai | |||
| ??? | M | M.HpyKH19ORFSP (93% identity) | M.Hpy12823ORF1522P | |
| 1524 | R | HpySP709ORF2150P (94% identity) | Hpy12823ORF1522P | |
| 1525 | rod shape-determining MreC family protein | |||
| 1535 | endonuclease | |||
| 1536 | M | M.HpyLI23ORF6695P (96% identity) | M.Hpy12823ORF1536P | |
| 1537 | R | HpySP104ORF6685P (91% identity) | Hpy12823ORF1536P | |
| 1538 | biotin synthase | |||