Helicobacter pylori NCTC13345 |
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Putative Helicobacter pylori NCTC13345 RM systems
Ref:
REBASE ref # 22501
Complete sequence: 1,644,315 bp
GenBank #: LR134517
REBASE acronym: Hpy13345
Org_num: 32640
All begin NCTC13345_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 81 | Uncharacterised protein | |||
| 82 | S | S.Hpy13345ORF930P (100% identity) | S.Hpy13345ORF85P | |
| 83 | CAAX protease | |||
| 84 | CAAX protease | |||
| ??? | M | M.HpyCO1XIV (96% identity) | M.Hpy13345ORF85P | |
| 87 | R | HpyS299ORF7180P (91% identity) | Hpy13345ORF85P | |
| 88 | metal-dependent hydrolase | |||
| 926 | outer membrane protein | |||
| 927 | S | S.Hpy13345ORF85P (100% identity) | S.Hpy13345ORF930P | |
| 928 | CAAX protease | |||
| 929 | CAAX protease | |||
| 930 | M | type I restriction endonuclease subunit M | M.Hpy13345ORF930P | |
| 931 | heavy-metal cation-transporting P-type | |||
| 986 | hydroxyethylthiazole kinase | |||
| 987 | R | HpyNG06ORF4250P (96% identity) | Hpy13345ORF989P | |
| 988 | S | S.HpyU202VII (46% identity) | S.Hpy13345ORF989P | |
| 989 | M | M.Hpy14039ORFHP (93% identity) | M.Hpy13345ORF989P | |
| 990 | phosphatidic acid phosphatase | |||
| 1045 | Uncharacterized protein conserved in bacteria | |||
| 1046 | R | HpyF009ORF4680P (94% identity) | Hpy13345ORF1047P | |
| 1047 | M | M.HpyGRE042ORF2200P (96% identity) | M.Hpy13345ORF1047P | |
| 1048 | S | S.HpyPR01ORF2145P (98% identity) | S.Hpy13345ORF1047P | |
| 1050 | polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11 | cytoplasmic protein | |||
| 13 | RM | Hpy340ORF995P (89% identity) | Hpy13345ORF13P | |
| 14 | Uncharacterised protein | |||
| 31 | outer membrane protein (omp32) | |||
| ??? | R | Hpy449ORF3635P (52% identity) | CCATC | Hpy13345IIIP |
| 33 | M | M1.HpySP606III (98% identity) | CCATC | M2.Hpy13345III |
| 34 | M | M2.HpyCOL208IV (98% identity) | CCATC | M1.Hpy13345III |
| 35 | Permease | |||
| 60 | HP1473-transformation associated protein | |||
| 61 | RM | HpyNG06ORF7085P (95% identity) | Hpy13345ORF61P | |
| 62 | S | S1.HpyNG19ORF7125P (94% identity) | S1.Hpy13345ORF61P | |
| 63 | S | S2.HpyNCI25ORFIP (91% identity) | S2.Hpy13345ORF61P | |
| 64 | DNA polymerase I | |||
| 205 | Agmatine deiminase | |||
| 206 | M | M1.HpyC014VI (96% identity) | CCTC | M1.Hpy13345IV |
| 207 | M | M2.HpySP19VIP (98% identity) | CCTC | M2.Hpy13345IVP |
| 208 | R | HpyI026ORF430P (35% identity) | CCTC | Hpy13345IVP |
| 209 | type II R-M system restriction endonuclease | |||
| 208 | type II R-M system restriction endonuclease | |||
| 209 | R | HpyMT5105IVP (50% identity) | CCTTC | Hpy13345VP |
| 210 | M | M.HpyME12VIII (97% identity) | CCTTC | M.Hpy13345V |
| 211 | SSS family proline:sodium (Na+) symporter | |||
| 253 | malonyl CoA-acyl carrier protein transacylase | |||
| ??? | R | HpyNG10VIIIP (98% identity) | GATC | Hpy13345IXP |
| 257 | M | M.Hpy13207IX (97% identity) | GATC | M.Hpy13345IX |
| 258 | alpha 1,2 fucosyltransferase | |||
| 418 | exodeoxyribonuclease VII large subunit | |||
| 419 | M | M.HpyI024XI (43% identity) | M.Hpy13345ORF419P | |
| 420 | tetrahydrofolate dehydrogenase/cyclohydrolase, | |||
| 451 | Laminin subunit alpha-2 precursor | |||
| 452 | R | HpyCOL209XIIIP (97% identity) | TCNNGA | Hpy13345ORFAP |
| ??? | M | M.HpyU404IX (43% identity) | M.Hpy13345ORFAP | |
| 453 | type II DNA modification enzyme | |||
| ??? | restriction endonuclease | |||
| 453 | M | M.HpyKG9ORF5085P (80% identity) | M.Hpy13345ORF453P | |
| 454 | biotin carboxylase | |||
| 590 | acetone carboxylase subunit gamma | |||
| ??? | R | HpyMT5135ORF3260P (94% identity) | Hpy13345ORF593P | |
| ??? | M | M.HpyC80XII (97% identity) | M.Hpy13345ORF593P | |
| 595 | polysaccharide biosynthesis protein | |||
| 610 | Phage protein | |||
| ??? | RM | HpyF020ORF3200P (90% identity) | Hpy13345ORF611P | |
| 613 | anaerobic glycerol-3-phosphate | |||
| 781 | metalloendopeptidase like protein | |||
| 782 | R | HpySW30XIP (98% identity) | GTAC | Hpy13345XP |
| 783 | M | M.HpyNCI56VI (98% identity) | GTAC | M.Hpy13345X |
| 784 | DNA gyrase subunit B | |||
| 825 | flagellar hook protein FlgE | |||
| 826 | R | HpyG020VIIIP (95% identity) | GTNNAC | Hpy13345XIP |
| 827 | M | M.HpyBG5XI (96% identity) | GTNNAC | M.Hpy13345XI |
| 828 | ATP-dependent DNA helicase | |||
| 1023 | Catalase like protein | |||
| ??? | R | HpyL031ORF2250P (93% identity) | ACGT | Hpy13345ORF1027P |
| 1027 | M | M.HpyCOL103ORF2300P (98% identity) | ACGT | M.Hpy13345ORF1027P |
| 1028 | type II restriction endonuclease | |||
| 1027 | type II DNA modification enzyme | |||
| 1028 | R | HpyNCI26IVP (99% identity) | ACNGT | Hpy13345ORF1029P |
| 1029 | M | M.HpyH013V (97% identity) | ACNGT | M.Hpy13345ORF1029P |
| 1030 | GTP-binding protein | |||
| 1031 | adenine specific DNA methyltransferase | |||
| 1032 | M | M.HpyU424ORF2230P (97% identity) | ATTAAT | M.Hpy13345II |
| 1033 | outer membrane protein HopJ | |||
| 1171 | Uncharacterised protein | |||
| 1172 | M | M.HpyGH9VIII (99% identity) | CTNAG | M.Hpy13345VI |
| 1173 | R | HpyGH9VIIIP (99% identity) | CTNAG | Hpy13345VIP |
| 1174 | polysaccharide deacetylase | |||
| 1220 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 1221 | M | M.HpyU437IV (99% identity) | CCGG | M.Hpy13345ORF1221P |
| 1222 | replication initiation protein A | |||
| 1223 | IS606 transposase | |||
| 1224 | IS200 insertion sequence from SARA17 | |||
| 1225 | R | HpyCOL103ORF1315P (83% identity) | Hpy13345ORF1221P | |
| 1226 | m6A methyltransferase | |||
| 1225 | type II DNA modification enzyme | |||
| 1226 | M | M.HpySP16ORF5225P (73% identity) | M.Hpy13345ORF1226P | |
| 1227 | cysteine-rich protein X | |||
| 1230 | Uncharacterised protein | |||
| 1231 | M | M.HpyAL8XVII (96% identity) | GCGC | M.Hpy13345ORF1231P |
| 1232 | negative regulator of flagellin synthesis FlgM | |||
| 1321 | haloacid dehalogenase/epoxide hydrolase | |||
| 1322 | M | M.HpyU403I (98% identity) | CATG | M.Hpy13345I |
| 1323 | IceA2 protein | |||
| 1460 | carboxyl-terminal protease | |||
| 1461 | R | HpySP611IXP (97% identity) | GANTC | Hpy13345VIIIP |
| 1462 | M | M.HpyNG17VI (99% identity) | GANTC | M.Hpy13345VIII |
| 1463 | DNA methyltransferase | |||
| 1462 | adenine specific DNA methyltransferase | |||
| ??? | RM | HpyK262ORF7560P (93% identity) | Hpy13345ORF1463P | |
| 1465 | nicotinate-nucleotide pyrophosphorylase | |||
| 1475 | two-component regulator | |||
| 1476 | R | HpyNG10ORF6525P (97% identity) | Hpy13345ORF1477P | |
| 1477 | M | M2.HpyMA17V (93% identity) | M.Hpy13345ORF1477P | |
| 1478 | adenine-specific DNA methylase | |||
| 1541 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1542 | R | HpySP609VIP (99% identity) | GAATTC | Hpy13345VIIP |
| 1543 | M | M.HpyC1119VI (99% identity) | GAATTC | M.Hpy13345VII |
| 1544 | lipopolysaccharide biosynthesis protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyCO9ORF6610P (97% identity) | M.Hpy13345ORF8P | |
| 10 | R | HpyBR20ORF6275P (96% identity) | Hpy13345ORF8P | |
| 11 | cytoplasmic protein | |||
| 1477 | modification methylase mjai | |||
| ??? | M | M.HpyBR20ORF7435P (95% identity) | M.Hpy13345ORF1478P | |
| 1480 | R | HpyBGR6ORF6565P (88% identity) | Hpy13345ORF1478P | |
| 1481 | rod shape-determining MreC family protein | |||
| 1491 | endonuclease | |||
| 1492 | M | M.HpyPE140ORF7445P (96% identity) | M.Hpy13345ORF1492P | |
| 1493 | R | HpyNG06ORF6725P (85% identity) | Hpy13345ORF1492P | |
| 1494 | biotin synthase | |||