Bifidobacterium bifidum NCTC13001 |
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Putative Bifidobacterium bifidum NCTC13001 RM systems
Ref:
REBASE ref # 22501
Complete sequence: 2,211,032 bp
GenBank #: LR134344
REBASE acronym: Bbi13001
Org_num: 32418
All begin NCTC13001_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 202 | mobilization protein | |||
| 203 | R | Bbi8628BORF167P (99% identity) | GAGNNNNNNRTTG | Bbi13001IIP |
| 204 | Abi family protein | |||
| ??? | S | S.Bbi8628BORF167P (100% identity) | GAGNNNNNNRTTG | S.Bbi13001II |
| 206 | Uncharacterised protein | |||
| 207 | M | M.Bbi8628BORF167P (99% identity) | GAGNNNNNNRTTG | M.Bbi13001II |
| 208 | phage protein | |||
| 883 | isoleucyl-tRNA synthetase | |||
| 884 | R | BloZJ1ORFCP (99% identity) | GATNNNNNTCC | Bbi13001IIIP |
| 885 | M | M.Bbi29521ORF1355P (100% identity) | GATNNNNNTCC | M.Bbi13001III |
| ??? | S | S1.BloBPORF2330P (100% identity) | S1.Bbi13001IIIP | |
| 886 | S | S2.Bbi29521ORF1355P (48% identity) | GATNNNNNTCC | S2.Bbi13001III |
| 887 | S | S2.Bbi29521ORF1355P (48% identity) | GATNNNNNTCC | S3.Bbi13001III |
| ??? | S | S3.BloFB11ORFEP (39% identity) | S4.Bbi13001IIIP | |
| ??? | S | S1.Bbi29521ORF1355P (100% identity) | S5.Bbi13001IIIP | |
| ??? | S | S4.Bbi4319ORF1329P (100% identity) | S6.Bbi13001IIIP | |
| 889 | the helix-turn-helix motif | |||
| 1099 | argininosuccinate synthase | |||
| 1100 | S | S3.Bbi3115ORF705P (100% identity) | S1.Bbi13001IP | |
| ??? | S | S2.PmeBin303ORFGP (99% identity) | S3.Bbi13001IP | |
| 1104 | M | M.Bbi29521ORF1139P (100% identity) | ACCNNNNNRTCG | M.Bbi13001I |
| 1105 | restriction endonuclease S subunit | |||
| 1106 | transcriptional regulator | |||
| 1107 | R | Bbi29521ORF1139P (100% identity) | ACCNNNNNRTCG | Bbi13001IP |
| 1108 | argininosuccinate lyase ArgH | |||
| 1104 | type I restriction-modification system | |||
| 1105 | S | S.Bbi29521ORF1139P (100% identity) | ACCNNNNNRTCG | S4.Bbi13001ORF1104P |
| 1106 | transcriptional regulator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 265 | protein | |||
| ??? | M | M.Bbi3115ORF1711P (100% identity) | M.Bbi13001ORF266P | |
| 267 | R | BbiBF3ORF180P (100% identity) | Bbi13001ORF266P | |
| 268 | Uncharacterised protein | |||
| 1387 | Uncharacterised protein | |||
| ??? | RM | Bbi29521ORF861P (99% identity) | Bbi13001ORFAP | |
| 1392 | Uncharacterised protein | |||
| 1727 | GTP-binding protein | |||
| 1728 | R | BbiS6ORF8015P (100% identity) | C | Bbi13001ORF1728P |
| 1729 | 16S RNA methylase | |||