Helicobacter pylori KH45 |
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Putative Helicobacter pylori KH45 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,619,572 bp
GenBank #: PHLH00000000 (NZ_PHLH00000000)
REBASE acronym: HpyKH45
Org_num: 32299
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | HpyIN8ORF2150P (81% identity) | HpyKH45ORFBP | |
| 2 | M | M.HpyIN8ORF2150P (100% identity) | M.HpyKH45ORFBP | |
| 3 | S | S.HpyIN8ORF2150P (92% identity) | S.HpyKH45ORFBP | |
| 4 | polyphosphate kinase 1 | |||
| 1 | M | M.HpyIN8ORF2440P (93% identity) | M.HpyKH45ORFYP | |
| 2 | phosphatase PAP2 family protein | |||
| 91 | outer membrane beta-barrel protein HofF | |||
| 93 | S | S.HpyIN8XIV (100% identity) | S.HpyKH45ORFRP | |
| 94 | cadmium-translocating P-type ATPase | |||
| 183 | hydroxyethylthiazole kinase | |||
| 184 | R | HpyIN8ORF2440P (100% identity) | HpyKH45ORFQP | |
| 186 | S | S.Hpy5AEK1ORFOP (67% identity) | S.HpyKH45ORFQP | |
| 281 | M48 family peptidase | |||
| 284 | R | HpyIN8VIP (99% identity) | HpyKH45ORFMP | |
| 285 | M | M.HpyIN8VI (100% identity) | M.HpyKH45ORFMP | |
| 286 | 154 aa unknown | |||
| 287 | 98 aa unknown | |||
| 288 | 67 aa hypothetical protein | |||
| 289 | S | S.HpyIN8VI (100% identity) | S.HpyKH45ORFMP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyIN8III (100% identity) | ATTAAT | M.HpyKH45ORFZP |
| 2 | modification methylase VspI domain protein | |||
| 3 | translational GTPase TypA | |||
| 5 | M | M.HpyIN8II (100% identity) | ACNGT | M.HpyKH45ORFA1P |
| 6 | R | GIY-YIG nuclease family protein | ACNGT | HpyKH45ORFA1P |
| 8 | DNA cytosine methyltransferase | |||
| 6 | GIY-YIG nuclease family protein | |||
| ??? | M | M.HpyIN8ORF2255P (100% identity) | M.HpyKH45ORFB1P | |
| ??? | R | HpyIN8ORF2255P (100% identity) | HpyKH45ORFB1P | |
| 14 | 66 aa hypothetical protein SE87_02515 | |||
| 10 | S41 family peptidase | |||
| 11 | R | HpyIN8VIIIP (100% identity) | GANTC | HpyKH45ORFWP |
| 12 | M | M.HpyIN8VIII (100% identity) | GANTC | M.HpyKH45ORFWP |
| 13 | DNA methyltransferase | |||
| 15 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 16 | R | HpyIN8ORF4360P (100% identity) | GTNNAC | HpyKH45ORFIP |
| 17 | M | M.HpyIN8ORF4360P (93% identity) | GTNNAC | M.HpyKH45ORFIP |
| 19 | ATP-dependent helicase | |||
| 12 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyIN8ORF6635P (96% identity) | HpyKH45ORFXP | |
| 15 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 25 | 78 aa hypothetical protein | |||
| 26 | RM | HpyIN8ORF7325P (100% identity) | HpyKH45ORFUP | |
| 28 | 176 aa hypothetical protein | |||
| 32 | metalloendopeptidase like protein | |||
| 33 | R | HpyKH11ORFGP (95% identity) | HpyKH45ORFJP | |
| 34 | M | M.HpyKH7ORFCP (97% identity) | M.HpyKH45ORFJP | |
| 35 | DNA topoisomerase subunit B | |||
| 32 | alpha-1,2-fucosyltransferase | |||
| 33 | M | M.HpyIN8IX (100% identity) | M.HpyKH45ORFGP | |
| 35 | 158 aa hypothetical protein | |||
| 55 | 59 aa hypothetical protein | |||
| 56 | M | M.HpyKH4ORFCP (95% identity) | M.HpyKH45ORFFP | |
| 57 | HAD family hydrolase | |||
| 68 | pseudaminic acid synthase | |||
| 69 | R | R2.HpyKH7ORFYP (100% identity) | R2.HpyKH45ORFVP | |
| 70 | R | R1.HpyIN8ORF855P (100% identity) | R1.HpyKH45ORFVP | |
| 71 | DNA cytosine methyltransferase | |||
| 72 | M | M1.HpyIN8ORF855P (100% identity) | M.HpyKH45ORFVP | |
| 73 | elongation factor P | |||
| 74 | outer membrane protein | |||
| ??? | RM | HpyUM084ORF4375P (88% identity) | HpyKH45ORFPP | |
| 78 | -binding protein | |||
| 92 | ComF family protein | |||
| 94 | RM | HpyIN8ORF7110P (100% identity) | HpyKH45ORFSP | |
| 95 | S | S1.HpyKH3ORFNP (100% identity) | S1.HpyKH45ORFSP | |
| 96 | S | S.HpyIN8ORF7110P (47% identity) | S2.HpyKH45ORFSP | |
| 97 | DNA polymerase I | |||
| 106 | sodium/proline symporter | |||
| 107 | M | M2.HpyIN8VP (100% identity) | M2.HpyKH45ORFNP | |
| 109 | M | M1.HpyIN8V (100% identity) | CCTC | M1.HpyKH45ORFNP |
| 111 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 108 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 109 | M | M.HpyIN8XII (100% identity) | TCNNGA | M.HpyKH45ORFOP |
| ??? | R | HpyIN8XIIP (93% identity) | TCNNGA | HpyKH45ORFOP |
| 112 | Laminin subunit alpha-2 precursor | |||
| 168 | uncharacterized protein | |||
| 169 | M | M.HpyIN8VII (100% identity) | CTNAG | M.HpyKH45ORFCP |
| 172 | R | HpyIN8VIIP (94% identity) | CTNAG | HpyKH45ORFCP |
| 173 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 157 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 158 | M | M.HpyIN8XV (98% identity) | M.HpyKH45ORFAP | |
| 159 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 257 | 103 aa hypothetical protein | |||
| 258 | R | HpyIN8XIIIP (100% identity) | TGCA | HpyKH45ORFHP |
| 261 | M | M.HpyIN8XIII (100% identity) | TGCA | M.HpyKH45ORFHP |
| 262 | 68 aa hypothetical protein | |||
| 246 | chaperone protein ClpB | |||
| 249 | M | M.HpyIN8IV (100% identity) | CCGG | M.HpyKH45ORFDP |
| 250 | R | HpyIN8IVP (93% identity) | CCGG | HpyKH45ORFDP |
| 251 | 66 aa hypothetical protein | |||
| 252 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 253 | M | M.HpyIN8XI (98% identity) | TCGA | M.HpyKH45ORFEP |
| 254 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyIN8ORF7340P (100% identity) | M.HpyKH45ORFTP | |
| 22 | 969 aa hypothetical protein | |||
| 23 | DNA/RNA non-specific endonuclease | |||
| 24 | M | M.HpyIN8ORF6760P (100% identity) | M.HpyKH45ORFKP | |
| 26 | R | HpyIN8ORF6760P (96% identity) | HpyKH45ORFKP | |
| 26 | DNA-binding response regulator | |||
| ??? | M | M.HpyIN8ORF6695P (63% identity) | M.HpyKH45ORFLP | |