Helicobacter pylori KH41 |
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Putative Helicobacter pylori KH41 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
GenBank #: PHLK00000000
REBASE acronym: HpyKH41
Org_num: 32296
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyIN6ORF3640P (100% identity) | S.HpyKH41ORFUP | |
| 3 | M | M.HpyIN6ORF3640P (93% identity) | M.HpyKH41ORFUP | |
| 4 | 59 aa hypothetical protein HPHPM6_1194 | |||
| 1 | R | HpyIN6ORF3640P (100% identity) | HpyKH41ORFYP | |
| 4 | hydroxyethylthiazole kinase | |||
| 1 | M | M.HpyIN6ORF7590P (95% identity) | M.HpyKH41ORFBP | |
| 2 | R | HpyIN6ORF7590P (99% identity) | HpyKH41ORFBP | |
| 4 | M48 family peptidase | |||
| 18 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | HpyIN6ORF4475P (100% identity) | HpyKH41ORFKP | |
| 21 | M | M.HpyIN6ORF4475P (100% identity) | M.HpyKH41ORFKP | |
| 22 | S | S.HpyIN6ORF4475P (100% identity) | S.HpyKH41ORFKP | |
| 23 | 60 aa hypothetical protein | |||
| 64 | 73 aa hypothetical protein | |||
| 65 | S | S.HpyUM037ORF1290P (97% identity) | S.HpyKH41ORFTP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | DNA methyltransferase | |||
| 2 | M | M.HpyKH35ORFNP (100% identity) | M.HpyKH41ORFPP | |
| ??? | R | HpyNP10ORF6580P (100% identity) | HpyKH41ORFPP | |
| 5 | S41 family peptidase | |||
| 1 | M | M.HpyNP10II (100% identity) | ATTAAT | M.HpyKH41ORFZP |
| 2 | 264 aa hypothetical protein | |||
| 6 | 108 aa hypothetical protein | |||
| 7 | M | M.HpyKH35ORFWP (100% identity) | M.HpyKH41ORFA1P | |
| 8 | R | HpyKH35ORFWP (100% identity) | HpyKH41ORFA1P | |
| 10 | DNA cytosine methyltransferase | |||
| 8 | GIY-YIG nuclease family protein | |||
| 10 | M | M.HpyIN6ORF4370P (100% identity) | M.HpyKH41ORFB1P | |
| 11 | R | HpyIN6ORF4370P (100% identity) | HpyKH41ORFB1P | |
| 12 | 75 aa hypothetical protein | |||
| 19 | 202 aa hypothetical protein HMPREF1397_00627 | |||
| ??? | M | M.HpyIN6ORF1445P (100% identity) | M.HpyKH41ORFXP | |
| 22 | R | HpyIN6ORF1445P (100% identity) | HpyKH41ORFXP | |
| 23 | Laminin subunit alpha-2 precursor | |||
| 19 | DNA topoisomerase subunit B | |||
| 21 | M | M.HpyKH39ORFHP (97% identity) | GTAC | M.HpyKH41ORFGP |
| 22 | R | HpyFD703ORF3535P (97% identity) | GTAC | HpyKH41ORFGP |
| 23 | metalloendopeptidase like protein | |||
| 22 | -binding protein | |||
| ??? | RM | HpyIN6ORF2705P (99% identity) | HpyKH41ORFSP | |
| 30 | 485 aa hypothetical protein | |||
| 35 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 36 | M | M.HpyIN6IX (98% identity) | GCGC | M.HpyKH41ORFDP |
| 37 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 21 | ATP-dependent helicase | |||
| 23 | M | M.HpyNP10VII (93% identity) | GTNNAC | M.HpyKH41ORFFP |
| 24 | R | HpyNP10VIIP (100% identity) | GTNNAC | HpyKH41ORFFP |
| 25 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| ??? | hypothetical protein | |||
| 46 | RM | HpyIN6ORF7260P (100% identity) | HpyKH41ORFOP | |
| 49 | 179 aa hypothetical protein | |||
| 40 | cysteine-rich protein X | |||
| ??? | M | DNA -methyltransferase | M.HpyKH41ORFQP | |
| 44 | 69 aa hypothetical protein HMPREF1400_01478 | |||
| 43 | HAD family hydrolase | |||
| 44 | M | M.HpyIN6I (100% identity) | CATG | M.HpyKH41ORFEP |
| 45 | 59 aa hypothetical protein | |||
| 45 | 75 aa hypothetical protein HMPREF1407_01483 | |||
| 46 | R | HpyIN6IIIP (93% identity) | CCGG | HpyKH41ORFRP |
| 47 | M | M.HpyIN6III (100% identity) | CCGG | M.HpyKH41ORFRP |
| 48 | chaperone protein ClpB | |||
| 40 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 41 | RM | HpyIN6ORF6590P (75% identity) | HpyKH41ORFHP | |
| 77 | outer membrane protein | |||
| ??? | R | HpyLIM3IIP (86% identity) | HpyKH41ORFMP | |
| 82 | restriction endonuclease NgoFVII | |||
| 123 | ComF family protein | |||
| 125 | RM | HpyIN6ORF7490P (100% identity) | HpyKH41ORFLP | |
| 126 | S | S.HpyIN6ORF7490P (86% identity) | S.HpyKH41ORFLP | |
| 127 | DNA polymerase I | |||
| 142 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 143 | M | M.Hpybs1ORFFP (86% identity) | M.HpyKH41ORFAP | |
| 144 | Translation elongation factor LepA | |||
| 175 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 176 | M | M.HpyIN6IVB (100% identity) | CCTC | M1.HpyKH41ORFIP |
| 178 | M | M2.HpyKH35ORFKP (100% identity) | CCTC | M2.HpyKH41ORFIP |
| 179 | 197 aa hypothetical protein | |||
| 178 | DNA cytosine methyltransferase | |||
| ??? | R | HpyIN6VP (77% identity) | CCTTC | HpyKH41ORFJP |
| 182 | 97 aa hypothetical protein | |||
| 183 | M | M.HpyUM037ORF8285P (62% identity) | CCTTC | M1.HpyKH41ORFJP |
| 184 | M | DNA -methyltransferase | M2.HpyKH41ORFJP | |
| 185 | sodium/proline symporter | |||
| 240 | 331 aa hypothetical protein | |||
| 241 | M | M.HpyIN6VI (100% identity) | GATC | M.HpyKH41ORFCP |
| 242 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2 | biotin synthase | |||
| ??? | R | HpyIN6ORF6715P (95% identity) | HpyKH41ORFWP | |
| 7 | M | M.HpyIN6ORF6715P (100% identity) | M.HpyKH41ORFWP | |
| 8 | DNA/RNA non-specific endonuclease | |||
| 23 | 66 aa hypothetical protein | |||
| 24 | R | HpyIN6ORF6650P (100% identity) | HpyKH41ORFVP | |
| ??? | M | M.HpyKH26ORFVP (96% identity) | M.HpyKH41ORFVP | |
| 29 | DNA-binding response regulator | |||
| 37 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyIN6ORF7245P (100% identity) | M.HpyKH41ORFNP | |
| ??? | R | HpyIN6ORF7245P (99% identity) | HpyKH41ORFNP | |
| 46 | class I SAM-dependent DNA methyltransferase | |||