Helicobacter pylori KH40 |
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Putative Helicobacter pylori KH40 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
GenBank #: PHLL00000000
REBASE acronym: HpyKH40
Org_num: 32295
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyT014ORF2315P (48% identity) | S.HpyKH40ORFA1P | |
| 2 | M | M.HpyJ182ORF3270P (31% identity) | M.HpyKH40ORFA1P | |
| ??? | R | HpyKH16ORFSP (89% identity) | HpyKH40ORFA1P | |
| 6 | 631 aa hypothetical protein U063_1207 | |||
| 69 | M48 family peptidase | |||
| 71 | R | HpyMM01ORF7395P (94% identity) | HpyKH40ORFRP | |
| ??? | M | M.HpyKH37ORFMP (96% identity) | M.HpyKH40ORFRP | |
| 77 | S | S.HpyU408ORF6805P (92% identity) | S.HpyKH40ORFRP | |
| 78 | LPP20 lipofamily protein | |||
| 108 | outer membrane beta-barrel protein HofF | |||
| 109 | S | S.Hpy13338ORF703P (95% identity) | S.HpyKH40ORFMP | |
| 110 | cadmium-translocating P-type ATPase | |||
| 195 | hydroxyethylthiazole kinase | |||
| 196 | R | HpyKH14ORFLP (96% identity) | HpyKH40ORFLP | |
| 199 | S | S.HpyTW23ORF4135P (97% identity) | S.HpyKH40ORFLP | |
| ??? | M | M.HpyKH39ORFC1P (83% identity) | M.HpyKH40ORFLP | |
| 204 | HrgA like protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyI019V (96% identity) | ATTAAT | M.HpyKH40ORFVP |
| 2 | modification methylase VspI domain protein | |||
| 4 | 162 aa hypothetical protein | |||
| 6 | M | M.Hpy05124ORFNP (93% identity) | M.HpyKH40ORFWP | |
| 7 | R | 158 aa hypothetical protein | HpyKH40ORFWP | |
| 9 | 84 aa hypothetical protein SE87_02515 | |||
| 8 | 335 aa hypothetical protein | |||
| 11 | M | M.HpyKH21ORFAP (97% identity) | GATC | M.HpyKH40ORFJP |
| 12 | alpha-1,2-fucosyltransferase | |||
| 15 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 16 | M | M.HpyKH11ORFEP (99% identity) | TCNNGA | M.HpyKH40ORFEP |
| 17 | R | HpyMM04XIIP (98% identity) | TCNNGA | HpyKH40ORFEP |
| 18 | Laminin subunit alpha-2 precursor | |||
| 26 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 27 | M | M1.HpyKH4ORFUP (98% identity) | CCTC | M1.HpyKH40ORFXP |
| 29 | M | M2.HpyLI26VIP (98% identity) | CCTC | M2.HpyKH40ORFXP |
| 30 | R | HpyKH4ORFUP (99% identity) | CCTC | HpyKH40ORFXP |
| 31 | site-specific DNA-methyltransferase | |||
| 27 | 95 aa hypothetical protein HPHPP30_1350 | |||
| ??? | R | HpyBG6ORF3320P (96% identity) | HpyKH40ORFNP | |
| 30 | M | M2.HpyPO02ORF2990P (86% identity) | M1.HpyKH40ORFNP | |
| ??? | M | M2.HpyU203ORF3725P (85% identity) | M2.HpyKH40ORFNP | |
| 34 | IS1595 family transposase | |||
| 30 | restriction endonuclease | |||
| 31 | M | M.Hpy280AORFJP (98% identity) | GTSAC | M.HpyKH40ORFYP |
| 32 | R | HpyN6ORFOP (98% identity) | GTSAC | HpyKH40ORFYP |
| 33 | sodium/proline symporter | |||
| 18 | ATP-dependent helicase | |||
| 19 | M | M.HpyMA02III (91% identity) | GTNNAC | M.HpyKH40ORFIP |
| 20 | R | HpyKH34ORFIP (97% identity) | GTNNAC | HpyKH40ORFIP |
| 21 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 32 | DNA topoisomerase subunit B | |||
| 34 | M | M.Hpy13207X (96% identity) | GTAC | M.HpyKH40ORFGP |
| 35 | R | HpyKH4ORFAP (96% identity) | GTAC | HpyKH40ORFGP |
| 36 | metalloendopeptidase like protein | |||
| 42 | cytochrome c1 | |||
| ??? | R | HpyOki112ORF7890P (99% identity) | TGCA | HpyKH40ORFSP |
| 46 | M | M.HpyNP02XIII (99% identity) | TGCA | M.HpyKH40ORFSP |
| 47 | 68 aa hypothetical protein | |||
| 46 | exodeoxyribonuclease VII large subunit | |||
| 47 | M | M.HpyCRI6XIII (98% identity) | TCGA | M.HpyKH40ORFAP |
| 48 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 49 | 62 aa hypothetical protein | |||
| 50 | M | M.HpyJO5I (98% identity) | CATG | M.HpyKH40ORFCP |
| 51 | HAD family hydrolase | |||
| 49 | 74 aa hypothetical protein L934_05055 | |||
| 50 | R | endonuclease MjaVIP | CCGG | HpyKH40ORFBP |
| 52 | M | M.HpyKH10ORFLP (99% identity) | CCGG | M.HpyKH40ORFBP |
| 53 | chaperone protein ClpB | |||
| 67 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 68 | M | M.HpyI008XVI (95% identity) | M.HpyKH40ORFFP | |
| 69 | 88 aa hypothetical protein | |||
| 83 | -binding protein | |||
| ??? | RM | HpyKH2ORFTP (89% identity) | HpyKH40ORFTP | |
| 88 | restriction endonuclease | |||
| 106 | glycosyltransferase family 8 protein | |||
| 108 | M | adenosine deaminase | M.HpyKH40ORFUP | |
| ??? | R | HpyPO01IVP (76% identity) | HpyKH40ORFUP | |
| 112 | UDP-N-acetylmuramate dehydrogenase | |||
| 106 | DNA polymerase I | |||
| 108 | S | S.HpyKH11ORFQP (96% identity) | S.HpyKH40ORFQP | |
| 109 | RM | HpyKH10ORFVP (94% identity) | HpyKH40ORFQP | |
| 110 | ComF family protein | |||
| 152 | YjgP/YjgQ family permease | |||
| 153 | M | M1.HpyMM01IV (99% identity) | CCATC | M1.HpyKH40ORFHP |
| 154 | M | M1.HpySP307III (93% identity) | CCATC | M2.HpyKH40ORFHP |
| 155 | R | HpyKH2ORFOP (98% identity) | CCATC | HpyKH40ORFHP |
| 156 | outer membrane protein | |||
| 179 | DUF4065 domain-containing protein | |||
| 180 | RM | HpyDO6XII (88% identity) | HpyKH40ORFOP | |
| 181 | 95 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 20 | R | HpyKH22ORFBP (96% identity) | HpyKH40ORFDP | |
| 21 | M | M.HpyMA25ORF3775P (96% identity) | M.HpyKH40ORFDP | |
| 22 | 81 aa hypothetical protein HMPREF1403_00513 | |||
| 31 | DNA-binding response regulator | |||
| ??? | M | M.HpyJ019ORF200P (92% identity) | M.HpyKH40ORFZP | |
| 35 | R | HpyLI29XVIIP (94% identity) | HpyKH40ORFZP | |
| 37 | 67 aa hypothetical protein | |||
| 52 | 111 aa hypothetical protein | |||
| 53 | M | M.HpyKH38ORFMP (92% identity) | M.HpyKH40ORFKP | |
| 54 | R | HpyKH34ORFKP (92% identity) | HpyKH40ORFKP | |
| 55 | biotin synthase | |||
| 181 | 95 aa hypothetical protein | |||
| 182 | R | HpyKH10ORFWP (96% identity) | HpyKH40ORFPP | |
| ??? | M | M.HpyKH31ORFPP (97% identity) | M.HpyKH40ORFPP | |
| 189 | ATP-dependent DNA helicase | |||