Helicobacter pylori KH39 |
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Putative Helicobacter pylori KH39 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,622,113 bp
GenBank #: PHLM00000000 (NZ_PHLM00000000)
REBASE acronym: HpyKH39
Org_num: 32294
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyR06ORF2730P (63% identity) | S.HpyKH39ORFVP | |
| 2 | R | HpyFD703ORF5075P (97% identity) | HpyKH39ORFVP | |
| 5 | hydroxyethylthiazole kinase | |||
| ??? | M | M.Hpy04ORFAP (85% identity) | M.HpyKH39ORFC1P | |
| 7 | HrgA like protein | |||
| 15 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | HpyU413ORF2140P (89% identity) | HpyKH39ORFNP | |
| 18 | M | M.HpyKH37ORFCP (96% identity) | M.HpyKH39ORFNP | |
| 19 | S | S.HpyL036ORF2325P (97% identity) | S.HpyKH39ORFNP | |
| 20 | polyphosphate kinase 1 | |||
| 28 | M48 family peptidase | |||
| ??? | R | HpyKH34ORFOP (95% identity) | HpyKH39ORFSP | |
| ??? | M | M.HpyKH34ORFOP (99% identity) | M.HpyKH39ORFSP | |
| 36 | S | S.HpyKH34ORFOP (100% identity) | S.HpyKH39ORFSP | |
| 37 | 97 aa hypothetical protein HPHPP2_1724 | |||
| 91 | cadmium-translocating P-type ATPase | |||
| ??? | S | S.HpyL002ORF2665P (54% identity) | S.HpyKH39ORFUP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9 | ATP-dependent helicase | |||
| 11 | M | M.HpyKH31ORFKP (97% identity) | GTNNAC | M.HpyKH39ORFMP |
| 12 | R | HpyFD430ORFB1P (98% identity) | GTNNAC | HpyKH39ORFMP |
| 13 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 35 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 36 | M | M.HpyKH34ORFCP (100% identity) | M.HpyKH39ORFCP | |
| 37 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 28 | site-specific DNA-methyltransferase | |||
| 30 | M | M2.HpyUBN18ORFOP (99% identity) | GAAGA | M1.HpyKH39ORFYP |
| 31 | M | M2.HpyKH31ORFVP (100% identity) | M2.HpyKH39ORFYP | |
| ??? | R | HpyKH31ORFVP (98% identity) | HpyKH39ORFYP | |
| 34 | DNA-binding response regulator | |||
| 31 | metalloendopeptidase like protein | |||
| 32 | R | HpyKH10ORFKP (98% identity) | GTAC | HpyKH39ORFHP |
| 33 | M | M.HpyFD719ORF4735P (98% identity) | GTAC | M.HpyKH39ORFHP |
| 34 | DNA topoisomerase subunit B | |||
| 54 | 66 aa hypothetical protein | |||
| 56 | R | HpyUM084ORF8465P (90% identity) | HpyKH39ORFZP | |
| 58 | M | M.HpyKH34ORFYP (100% identity) | M.HpyKH39ORFZP | |
| 59 | GIY-YIG nuclease family protein | |||
| 45 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 46 | RM | HpyKH31ORFTAP (95% identity) | HpyKH39ORFWAP | |
| 47 | RM | HpyJA113ORF265P (25% identity) | HpyKH39ORFWBP | |
| 48 | S41 family peptidase | |||
| 58 | DNA cytosine methyltransferase | |||
| 59 | R | HpyKH34ORFZP (99% identity) | ACNGT | HpyKH39ORFA1P |
| 61 | M | M.HpyKH34ORFZP (99% identity) | ACNGT | M.HpyKH39ORFA1P |
| 62 | 112 aa hypothetical protein | |||
| 65 | modification methylase VspI domain protein | |||
| 66 | M | M.HpyKH7ORFZP (98% identity) | ATTAAT | M.HpyKH39ORFB1P |
| 67 | outer membrane beta-barrel protein | |||
| 53 | restriction endonuclease | |||
| 54 | RM | HpyMA17ORF4115P (28% identity) | HpyKH39ORFTBP | |
| 55 | RM | HpyMA04ORF3150P (63% identity) | HpyKH39ORFTAP | |
| 58 | -binding protein | |||
| 59 | 95 aa hypothetical protein | |||
| 60 | RM | HpyMA19ORF7115P (90% identity) | HpyKH39ORFRP | |
| 61 | DUF4065 domain-containing protein | |||
| 81 | Laminin subunit alpha-2 precursor | |||
| 83 | R | HpyKH34ORFBP (100% identity) | HpyKH39ORFDP | |
| 85 | M | M.HpyKH26ORFZP (80% identity) | M.HpyKH39ORFDP | |
| 86 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 81 | outer membrane protein | |||
| 83 | R | HpyKH37ORFHP (96% identity) | CCATC | HpyKH39ORFIP |
| 84 | M | M1.HpyKH34ORFJP (100% identity) | CCATC | M1.HpyKH39ORFIP |
| 85 | M | M2.HpyKH34ORFJP (99% identity) | CCATC | M2.HpyKH39ORFIP |
| 86 | YjgP/YjgQ family permease | |||
| 125 | ComF family protein | |||
| 127 | R | HpyBG9XIP (99% identity) | HpyKH39ORFJP | |
| 128 | M | M1.HpyBG9XI (99% identity) | M.HpyKH39ORFJP | |
| 129 | DNA adenine methylase | |||
| 128 | RNA methyltransferase | |||
| 129 | M | M1.HpyK036XIII (98% identity) | M.HpyKH39ORFKP | |
| 130 | transcriptional regulator | |||
| 180 | uncharacterized protein | |||
| 182 | M | M.HpyKH44ORFAP (99% identity) | CTNAG | M.HpyKH39ORFEP |
| 185 | R | HpyKH17ORFEP (98% identity) | CTNAG | HpyKH39ORFEP |
| 186 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 215 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 216 | M | M1.HpyKH22ORFOP (97% identity) | CCTC | M1.HpyKH39ORFOP |
| 218 | M | M2.Hpy53ORFCP (98% identity) | CCTC | M2.HpyKH39ORFOP |
| 219 | R | HpyMA04VIIP (95% identity) | CCTC | HpyKH39ORFOP |
| 220 | site-specific DNA-methyltransferase | |||
| 219 | restriction endonuclease | |||
| 220 | M | M.HpyKH34ORFPP (100% identity) | GTSAC | M.HpyKH39ORFPP |
| 221 | R | HpyKH34ORFPP (100% identity) | GTSAC | HpyKH39ORFPP |
| 222 | DNA cytosine methyltransferase | |||
| 281 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 282 | R | HpyKH34ORFAP (99% identity) | GATC | HpyKH39ORFAP |
| 283 | M | M.HpyMA16II (97% identity) | GATC | M.HpyKH39ORFAP |
| 284 | alpha-1,2-fucosyltransferase | |||
| 258 | chaperone protein ClpB | |||
| 261 | M | M.HpyPO12II (99% identity) | CCGG | M.HpyKH39ORFFP |
| 262 | R | HpyUM067ORF2045P (84% identity) | CCGG | HpyKH39ORFFP |
| 263 | 169 aa hypothetical protein HMPREF1401_01153 | |||
| 264 | 63 aa hypothetical protein | |||
| 265 | M | M.HpyBG1XV (96% identity) | TCGA | M.HpyKH39ORFGP |
| 266 | exodeoxyribonuclease VII large subunit | |||
| 362 | HAD family hydrolase | |||
| 363 | M | M.HpyFD430ORFF1P (97% identity) | M.HpyKH39ORFBP | |
| 364 | IceA2 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4 | biotin synthase | |||
| 6 | R | HpyKH45ORFKP (90% identity) | HpyKH39ORFLP | |
| 7 | M | M.HpyFD662ORF8020P (94% identity) | M.HpyKH39ORFLP | |
| 8 | DNA/RNA non-specific endonuclease | |||
| 25 | 66 aa hypothetical protein | |||
| 26 | R | HpyKH34ORFXP (95% identity) | HpyKH39ORFXP | |
| 28 | M | M.HpySG38ORF205P (91% identity) | M.HpyKH39ORFXP | |
| 30 | DUF1887 family protein | |||
| 53 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyBG8ORF7020P (97% identity) | M.HpyKH39ORFQP | |
| 57 | R | HpyKH10ORFWP (96% identity) | HpyKH39ORFQP | |
| 59 | 95 aa hypothetical protein | |||