Helicobacter pylori H-137 |
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Putative Helicobacter pylori H-137 RM systems
Ref: Nam,Y.-D. et al. unpublished
REBASE ref # 24816
Complete sequence: 1,637,442 bp
GenBank #: CP025474
REBASE acronym: HpyH137
Org_num: 32355
All begin CYK58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 500 | formyltetrahydrofolate deformylase | |||
| 505 | S | S.HpyV001ORF7420P (98% identity) | S.HpyH137ORF505P | |
| 510 | nickel transporter | |||
| 4715 | outer membrane beta-barrel protein HofF | |||
| 4720 | S | S.Hpyfe76ORF3425P (96% identity) | S.HpyH137ORF4720P | |
| 4725 | cadmium-translocating P-type ATPase | |||
| 5020 | hydroxyethylthiazole kinase | |||
| 5025 | R | Hpy04ORFAP (97% identity) | HpyH137ORF5035P | |
| 5030 | S | S.Hpyfe110ORF4070P (95% identity) | S.HpyH137ORF5035P | |
| 5035 | M | M.HpyK037XIII (97% identity) | M.HpyH137ORF5035P | |
| 5040 | type I restriction endonuclease | |||
| 5305 | 631 aa hypothetical protein | |||
| 5310 | R | HpyK109ORF4615P (94% identity) | HpyH137ORF5315P | |
| 5315 | M | M.HpyK022IX (97% identity) | M.HpyH137ORF5315P | |
| 5320 | S | S.HpyF235ORFJP (98% identity) | S.HpyH137ORF5315P | |
| 5330 | RNA degradosome polyphosphate kinase | |||
| 7950 | metal-dependent hydrolase | |||
| 7955 | R | HpyK048ORF7150P (96% identity) | HpyH137ORF7960P | |
| 7960 | M | M.HpyOK34ORFIP (97% identity) | M.HpyH137ORF7960P | |
| 7965 | CAAX protease | |||
| 7970 | S | S.HpyBS07ORF5070P (97% identity) | S.HpyH137ORF7960P | |
| 7975 | thymidylate synthase (FAD) | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | DEAD/DEAH box helicase | |||
| 55 | RM | HpyP96ORFBP (93% identity) | HpyH137ORF55P | |
| 60 | transcription termination/antitermination | |||
| 135 | outer membrane protein | |||
| 140 | R | HpyPE11VIIP (97% identity) | CCATC | HpyH137ORF145P |
| 145 | M | M2.HpyK049IV (100% identity) | CCATC | M2.HpyH137ORF145P |
| 150 | M | M1.HpyCHN4II (100% identity) | CCATC | M1.HpyH137ORF145P |
| 155 | permease | |||
| 280 | amidophosphoribosyltransferase | |||
| 285 | RM | HpyK043ORF6905P (99% identity) | HpyH137ORF285P | |
| 290 | S | S1.HpyK110ORF6955P (99% identity) | S1.HpyH137ORF285P | |
| 295 | S | S.HpyMA03ORF6950P (47% identity) | S2.HpyH137ORF285P | |
| 300 | DNA polymerase I | |||
| 1465 | serine O-acetyltransferase | |||
| 1470 | R | HpyK014IP (87% identity) | CATG | HpyH137ORF1475P |
| 1475 | M | M.Hpyfe83ORF1375P (98% identity) | CATG | M.HpyH137ORF1475P |
| 1480 | HAD family hydrolase | |||
| 1925 | flagellar biosynthesis protein FlgM | |||
| 1930 | M | M.HpyK115XI (96% identity) | GCGC | M.HpyH137ORF1930P |
| 1935 | 144 aa hypothetical protein | |||
| 2110 | Laminin subunit alpha-2 precursor | |||
| 2115 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | HpyH137ORF2120P |
| 2120 | M | M.HpyL018XIII (99% identity) | TCNNGA | M.HpyH137ORF2120P |
| 2125 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2835 | ATP-dependent DNA helicase | |||
| 2840 | M | M.HpyTW05XI (97% identity) | GTNNAC | M.HpyH137ORF2840P |
| 2845 | R | HpyDU7AORFKP (96% identity) | GTNNAC | HpyH137ORF2840P |
| 2850 | flagellar hook protein FlgE | |||
| 4030 | glycerol-3-phosphate dehydrogenase | |||
| 4035 | RM | Hpyfe71ORF3920P (92% identity) | HpyH137ORF4035P | |
| 4040 | 60 aa hypothetical protein | |||
| 5200 | DNA (cytosine-5-)-methyltransferase | |||
| 5205 | R | HpyK053ORF2345P (97% identity) | ACGT | HpyH137ORF5210P |
| 5210 | M | M.Hpyfe37ORF4740P (99% identity) | ACGT | M.HpyH137ORF5210P |
| 5215 | restriction endonuclease | |||
| 5210 | DNA (cytosine-5-)-methyltransferase | |||
| 5215 | R | Hpyfe97ORF5110P (99% identity) | ACNGT | HpyH137ORF5220P |
| 5220 | M | M.HpyK034ORF2320P (100% identity) | M.HpyH137ORF5220P | |
| 5225 | translational GTPase TypA | |||
| 5230 | glycosyltransferase 9 family protein | |||
| 5235 | M | M.HpyPU006III (97% identity) | ATTAAT | M.HpyH137ORF5235P |
| 5240 | 367 aa hypothetical protein | |||
| 5960 | 125 aa hypothetical protein | |||
| 5965 | M | M.HpyR02V (99% identity) | CTNAG | M.HpyH137ORF5965P |
| 5970 | R | Hpyfe73ORF5705P (98% identity) | CTNAG | HpyH137ORF5965P |
| 5975 | DUF2334 domain-containing protein | |||
| 6205 | ATP-dependent chaperone ClpB | |||
| 6210 | M | M.Hpyfe60ORF5840P (100% identity) | CCGG | M.HpyH137ORF6210P |
| 6215 | R | HpyK037IIIP (78% identity) | CCGG | HpyH137ORF6210P |
| 6220 | exodeoxyribonuclease VII large subunit | |||
| 7065 | alpha-1,2-fucosyltransferase | |||
| 7070 | M | M.HpyKG6IX (98% identity) | GATC | M.HpyH137ORF7070P |
| 7075 | R | HpySG07VIIIP (96% identity) | GATC | HpyH137ORF7070P |
| 7085 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7285 | sodium/proline symporter PutP | |||
| 7290 | M | M2.HpySW25IX (48% identity) | M1.HpyH137ORF7290P | |
| 7295 | site-specific DNA-methyltransferase | |||
| 7335 | peptidase S41 | |||
| 7340 | RM | HpyK007ORF260P (92% identity) | HpyH137ORF7340P | |
| 7345 | nicotinate-nucleotide diphosphorylase | |||
| 7860 | 107 aa hypothetical protein | |||
| 7865 | R | HpyID8XIVP (98% identity) | TGCA | HpyH137ORFAP |
| ??? | M | M.Hpys8ORF2420P (98% identity) | TGCA | M.HpyH137ORFAP |
| 7875 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe61ORF40P (97% identity) | M.HpyH137ORF40P | |
| 50 | R | Hpyfe24ORF40P (97% identity) | HpyH137ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 660 | type III restriction endonuclease subunit R | |||
| 665 | R | Hpyfe56ORF670P (92% identity) | HpyH137ORF670P | |
| 670 | M | M.HpyK042ORF6590P (97% identity) | M.HpyH137ORF670P | |
| 675 | multidrug resistance protein | |||
| 4860 | 145 aa hypothetical protein | |||
| 4865 | R | HpyK025ORF200P (95% identity) | HpyH137ORF4870P | |
| 4870 | M | M.HpyCHN2XVI (97% identity) | M.HpyH137ORF4870P | |
| 4875 | osmoprotection protein | |||