Helicobacter pylori KH37 |
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Putative Helicobacter pylori KH37 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,623,802 bp
GenBank #: PHLO00000000 (NZ_PHLO00000000)
REBASE acronym: HpyKH37
Org_num: 32156
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | Uncharacterised protein | |||
| 2 | R | HpyMA25ORF2275P (73% identity) | HpyKH37ORFCP | |
| 3 | M | M.HpyKH4ORFH1P (97% identity) | M.HpyKH37ORFCP | |
| 4 | S | S.Hpy12823ORF590P (97% identity) | S.HpyKH37ORFCP | |
| 5 | 61 aa hypothetical protein | |||
| 1 | S | S.HpyKH37ORFUP (65% identity) | S.HpyKH37ORFVP | |
| 2 | HsdR family type I site-specific deoxyribonuclease | |||
| 1 | 271 aa hypothetical protein | |||
| 2 | R | HpyL017ORF4315P (93% identity) | HpyKH37ORFWP | |
| 5 | hydroxyethylthiazole kinase | |||
| 1 | 76 aa hypothetical protein | |||
| ??? | M | M.HpyMM11ORF4090P (97% identity) | M.HpyKH37ORFA1P | |
| 4 | DNA cytosine methyltransferase | |||
| 89 | cadmium-translocating P-type ATPase | |||
| ??? | S | S.HpyMA19ORF2265P (64% identity) | S.HpyKH37ORFUP | |
| 299 | M48 family peptidase | |||
| 302 | R | HpyMA02ORF7510P (94% identity) | HpyKH37ORFMP | |
| 303 | M | M.HpyKH32ORFKP (97% identity) | M.HpyKH37ORFMP | |
| 305 | 258 aa unknown | |||
| 306 | S | S.HpyPOR111XIV (92% identity) | S.HpyKH37ORFMP | |
| 307 | glutamine--fructose-6-phosphate transaminase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | HpyNP03ORF6785P (84% identity) | HpyKH37ORFZP | |
| 3 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 1 | adenine specific DNA methyltransferase 2 domain protein | |||
| 2 | M | M.HpyMA19V (99% identity) | GANTC | M.HpyKH37ORFPP |
| 3 | R | HpyKH43ORFYP (97% identity) | GANTC | HpyKH37ORFPP |
| 4 | S41 family peptidase | |||
| 1 | M | M.HpyMM10ORF2055P (97% identity) | ATTAAT | M.HpyKH37ORFC1P |
| 2 | modification methylase VspI domain protein | |||
| ??? | hypothetical protein | |||
| 4 | M | M.HpyKH23ORFJP (99% identity) | M.HpyKH37ORFB1P | |
| 5 | R | HpyMA02ORF2280P (98% identity) | HpyKH37ORFB1P | |
| 6 | 63 aa hypothetical protein HPHPM6_1194 | |||
| 5 | 108 aa hypothetical protein | |||
| 6 | M | DNA adenine methylase | M.HpyKH37ORFD1P | |
| 7 | R | HpyKH17ORFG1P (81% identity) | HpyKH37ORFD1P | |
| 9 | DNA cytosine methyltransferase | |||
| 12 | 68 aa hypothetical protein | |||
| 13 | RM | HpyBS06ORF55P (63% identity) | HpyKH37ORFGP | |
| 15 | 110 aa hypothetical protein HMPREF1411_00815 | |||
| 7 | GIY-YIG nuclease family protein | |||
| 9 | M | M.HpyCA14ORF2475P (86% identity) | M.HpyKH37ORFE1P | |
| 10 | catalase family peroxidase | |||
| 6 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 7 | M | M.HpyFD423ORFRP (96% identity) | M.HpyKH37ORFOP | |
| 8 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 14 | DNA-binding response regulator | |||
| 15 | R | HpyKH22ORFXP (98% identity) | GAAGA | HpyKH37ORFXP |
| 16 | M | M2.HpyBS06ORF810P (99% identity) | GAAGA | M2.HpyKH37ORFXP |
| 17 | M | M2.HpyUBN18ORFOP (99% identity) | GAAGA | M1.HpyKH37ORFXP |
| 18 | site-specific DNA-methyltransferase | |||
| 20 | ATP-dependent helicase | |||
| 21 | M | M.HpyFD430ORFB1P (98% identity) | M.HpyKH37ORFFP | |
| 22 | R | HpyU431IXP (98% identity) | GTNNAC | HpyKH37ORFFP |
| 23 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 42 | HAD family hydrolase | |||
| 43 | M | M.Hpy479CORFBP (96% identity) | M.HpyKH37ORFBP | |
| 44 | serine acetyltransferase | |||
| 38 | metalloendopeptidase like protein | |||
| 39 | R | HpyFD423ORFTP (71% identity) | HpyKH37ORFJP | |
| 40 | 69 aa hypothetical protein N206_05345 | |||
| 39 | outer membrane protein | |||
| 41 | R | HpyUM084ORF2040P (97% identity) | CCATC | HpyKH37ORFHP |
| 42 | M | M2.HpyFD662ORF310P (99% identity) | CCATC | M1.HpyKH37ORFHP |
| 43 | M | M1.HpyMM05IV (99% identity) | CCATC | M2.HpyKH37ORFHP |
| 44 | YjgP/YjgQ family permease | |||
| 40 | alpha-1,2-fucosyltransferase | |||
| 41 | M | M.HpyMM01XI (97% identity) | GATC | M.HpyKH37ORFKP |
| 43 | HrgA protein | |||
| 37 | Laminin subunit alpha-2 precursor | |||
| 39 | R | HpyMM06XP (99% identity) | TCNNGA | HpyKH37ORFAP |
| 40 | M | M.HpyKH11ORFEP (99% identity) | TCNNGA | M.HpyKH37ORFAP |
| 41 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 92 | lipopolysaccharide heptosyltransferase family protein | |||
| ??? | R | HpyMA16ORF6370P (97% identity) | HpyKH37ORFTP | |
| 100 | M | M.HpyLI25VI (97% identity) | M.HpyKH37ORFTP | |
| 101 | lipopolysaccharide heptosyltransferase family protein | |||
| 72 | outer membrane protein | |||
| 73 | RM | HpyFD430ORFJ1P (43% identity) | HpyKH37ORFSBP | |
| 75 | RM | HpyKH38ORFFP (43% identity) | HpyKH37ORFSAP | |
| 77 | -binding protein | |||
| 84 | ComF family protein | |||
| 85 | RM | HpyKH36ORFPP (98% identity) | HpyKH37ORFIP | |
| 128 | sodium/proline symporter | |||
| 129 | M | M1.HpyMA17III (96% identity) | M.HpyKH37ORFLP | |
| 131 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 227 | chaperone protein ClpB | |||
| 231 | M | M.HpyU404III (100% identity) | CCGG | M.HpyKH37ORFDP |
| 232 | R | HpyGORF242P (81% identity) | CCGG | HpyKH37ORFDP |
| 233 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 233 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 234 | M | M.HpySP406IX (94% identity) | M.HpyKH37ORFEP | |
| 235 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17 | DUF1887 family protein | |||
| ??? | M | M.HpyKH31ORFUP (95% identity) | M.HpyKH37ORFYP | |
| ??? | R | HpyKH14ORFSP (94% identity) | HpyKH37ORFYP | |
| 26 | 78 aa hypothetical protein | |||
| 43 | DNA/RNA non-specific endonuclease | |||
| 44 | M | M.HpyMA02ORF6635P (95% identity) | M.HpyKH37ORFNP | |
| 45 | R | HpyUM084ORF8205P (92% identity) | HpyKH37ORFNP | |
| 46 | biotin synthase | |||
| 189 | 83 aa hypothetical protein HMPREF1403_00513 | |||
| 190 | M | M.HpyKH22ORFBP (96% identity) | M.HpyKH37ORFRP | |
| ??? | R | HpyKH22ORFBP (96% identity) | HpyKH37ORFRP | |
| 193 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 323 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyKH1ORFNP (94% identity) | M.HpyKH37ORFQP | |
| 327 | R | HpyKH17ORFXP (96% identity) | HpyKH37ORFQP | |
| 329 | class I SAM-dependent DNA methyltransferase | |||