Helicobacter pylori KH36 |
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Putative Helicobacter pylori KH36 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,644,588 bp
GenBank #: PHLP00000000 (NZ_PHLP00000000)
REBASE acronym: HpyKH36
Org_num: 32014
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyIS2ORF2145P (98% identity) | S.HpyKH36ORFHP | |
| 2 | M | M.HpyMT5114ORF2130P (91% identity) | M.HpyKH36ORFHP | |
| 3 | R | HpyC023ORF2165P (73% identity) | HpyKH36ORFHP | |
| 95 | hydroxyethylthiazole kinase | |||
| 96 | R | HpyCOL3ORF4185P (92% identity) | HpyKH36ORFQP | |
| 97 | S | S.HpyC122X (96% identity) | S.HpyKH36ORFQP | |
| 98 | M | M.HpyFD703ORF5075P (96% identity) | M.HpyKH36ORFQP | |
| 99 | type I restriction endonuclease subunit M | |||
| 254 | M48 family peptidase | |||
| 257 | R | HpyBG5IVP (93% identity) | HpyKH36ORFJP | |
| ??? | M | M.HpyGT7XII (95% identity) | M.HpyKH36ORFJP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4 | 63 aa hypothetical protein | |||
| 5 | R | HpyKH35ORFXP (100% identity) | HpyKH36ORFZP | |
| 9 | M | M.HpyKH35ORFXP (99% identity) | M.HpyKH36ORFZP | |
| 10 | GIY-YIG nuclease family protein | |||
| 9 | DNA cytosine methyltransferase | |||
| 10 | R | GIY-YIG nuclease family protein | HpyKH36ORFA1P | |
| ??? | M | M.HpyKG8ORF3415P (78% identity) | M.HpyKH36ORFA1P | |
| 14 | 108 aa hypothetical protein | |||
| 17 | modification methylase VspI domain protein | |||
| 18 | M | M.HpyKH26ORFD1P (98% identity) | ATTAAT | M.HpyKH36ORFB1P |
| 12 | alpha-1,2-fucosyltransferase | |||
| 13 | M | M.HpySP304VIII (97% identity) | GATC | M.HpyKH36ORFEP |
| 15 | 331 aa hypothetical protein | |||
| 16 | DNA topoisomerase subunit B | |||
| 18 | M | M.Hpy13207X (98% identity) | GTAC | M.HpyKH36ORFDP |
| 19 | R | HpyKH40ORFGP (96% identity) | GTAC | HpyKH36ORFDP |
| 20 | metalloendopeptidase like protein | |||
| 31 | DNA polymerase I | |||
| 34 | S | S.HpyKH22ORFE1P (96% identity) | S.HpyKH36ORFPP | |
| 35 | RM | HpyNP10ORF7465P (98% identity) | HpyKH36ORFPP | |
| 36 | ComF family protein | |||
| 23 | -binding protein | |||
| 24 | RM | HpyUM084ORF4375P (49% identity) | HpyKH36ORFXAP | |
| 27 | RM | DEAD/DEAH box helicase | HpyKH36ORFXBP | |
| 30 | 449 aa hypothetical protein | |||
| 33 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 34 | M | M.HpyBG5XIII (96% identity) | M.HpyKH36ORFCP | |
| 35 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 22 | Laminin subunit alpha-2 precursor | |||
| ??? | R | HpyKH35ORFA1P (100% identity) | HpyKH36ORFYP | |
| ??? | M | M.HpyML2ORFWP (94% identity) | M.HpyKH36ORFYP | |
| 29 | 200 aa hypothetical protein HMPREF1397_00627 | |||
| 19 | ATP-dependent helicase | |||
| 20 | M | M.HpyH017VII (91% identity) | GTNNAC | M.HpyKH36ORFGP |
| 21 | R | HpyI019XVP (95% identity) | GTNNAC | HpyKH36ORFGP |
| 22 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 39 | cysteine-rich protein X | |||
| ??? | M | DNA -methyltransferase | M.HpyKH36ORFRP | |
| 43 | 69 aa hypothetical protein HMPREF1400_01478 | |||
| 44 | 75 aa hypothetical protein HMPREF1407_01483 | |||
| 45 | R | HpyBG9VIP (93% identity) | CCGG | HpyKH36ORFSP |
| 46 | M | M.HpyNCI25VI (99% identity) | CCGG | M.HpyKH36ORFSP |
| 48 | chaperone protein ClpB | |||
| 46 | HAD family hydrolase | |||
| 47 | M | M.HpyNP10I (99% identity) | CATG | M.HpyKH36ORFBP |
| 48 | 59 aa hypothetical protein | |||
| 41 | Translation elongation factor LepA | |||
| 42 | M | M.Hpybs1ORFFP (86% identity) | M.HpyKH36ORFAP | |
| 43 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 36 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | M.HpyKH35ORFOP (90% identity) | HpyKH36ORFTP | |
| 44 | site-specific DNA-methyltransferase | |||
| ??? | hypothetical protein | |||
| 44 | M | M.Hpy14039ORFVP (99% identity) | M.HpyKH36ORFUP | |
| ??? | R | HpyNP10ORF6580P (99% identity) | HpyKH36ORFUP | |
| 47 | S41 family peptidase | |||
| 53 | 3'-5' exonuclease | |||
| 54 | M | M.HpyKH10ORFFP (99% identity) | CCNNGG | M.HpyKH36ORFIP |
| 55 | R | HpyMM01VIP (100% identity) | CCNNGG | HpyKH36ORFIP |
| 77 | YjgP/YjgQ family permease | |||
| 78 | M | M2.HpyNP10III (100% identity) | CCATC | M1.HpyKH36ORFOP |
| ??? | M | M2.HpyUM037VI (100% identity) | CCATC | M2.HpyKH36ORFOP |
| ??? | R | HpyMM03IVP (94% identity) | CCATC | HpyKH36ORFOP |
| 83 | outer membrane protein | |||
| 69 | sodium/proline symporter | |||
| ??? | M | M.HpyNP10ORF275P (97% identity) | M.HpyKH36ORFKP | |
| 72 | 97 aa hypothetical protein | |||
| 73 | R | HpyKH26ORFRP (99% identity) | HpyKH36ORFKP | |
| 74 | DNA cytosine methyltransferase | |||
| 73 | 325 aa hypothetical protein | |||
| ??? | M | M.HpyN6ORFPP (49% identity) | M.HpyKH36ORFLP | |
| 77 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 107 | 179 aa hypothetical protein | |||
| 110 | RM | HpyID9XIX (94% identity) | HpyKH36ORFMP | |
| 113 | 969 aa hypothetical protein | |||
| 226 | elongation factor Ts | |||
| 228 | R | HpyUM037VIIIP (100% identity) | TGCA | HpyKH36ORFFP |
| 230 | M | M.HpyBG5X (100% identity) | TGCA | M.HpyKH36ORFFP |
| 231 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyBG5ORF6765P (96% identity) | HpyKH36ORFWP | |
| ??? | M | M.HpyBG5ORF6765P (99% identity) | M.HpyKH36ORFWP | |
| 6 | DNA/RNA non-specific endonuclease | |||
| 20 | rod shape-determining MreC family protein | |||
| 21 | R | HpyKH35ORFLP (99% identity) | HpyKH36ORFVP | |
| ??? | M | M.HpyJO7ORF6585P (93% identity) | M.HpyKH36ORFVP | |
| 25 | DNA-binding response regulator | |||
| 110 | class I SAM-dependent DNA methyltransferase | |||
| 113 | R | HpyL014ORF7550P (95% identity) | HpyKH36ORFNP | |
| ??? | M | M.HpyC110ORF680P (96% identity) | M.HpyKH36ORFNP | |
| 120 | ATP-dependent DNA helicase | |||