Helicobacter pylori KH35 |
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Putative Helicobacter pylori KH35 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,657,309 bp
GenBank #: PHLQ00000000 (NZ_PHLQ00000000)
REBASE acronym: HpyKH35
Org_num: 32013
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16 | 631 aa hypothetical protein U063_1207 | |||
| 17 | R | HpyKH27ORFLP (91% identity) | HpyKH35ORFAP | |
| 18 | M | M.HpyFD703ORF2305P (95% identity) | M.HpyKH35ORFAP | |
| 19 | S | S.HpyP009ORF4050P (98% identity) | S.HpyKH35ORFAP | |
| 20 | polyphosphate kinase 1 | |||
| 34 | hydroxyethylthiazole kinase | |||
| 35 | R | HpyUM067ORF6745P (91% identity) | HpyKH35ORFUP | |
| 38 | S | S.HpyME44ORF2510P (95% identity) | S.HpyKH35ORFUP | |
| ??? | M | M.HpyOK318ORFVP (92% identity) | M.HpyKH35ORFUP | |
| 42 | phosphatase PAP2 family protein | |||
| 309 | M48 family peptidase | |||
| 312 | R | HpyNP10ORF7570P (98% identity) | HpyKH35ORFGP | |
| 314 | M | M.HpyIN6ORF7590P (96% identity) | M.HpyKH35ORFGP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyNP10II (100% identity) | ATTAAT | M.HpyKH35ORFVP |
| 2 | 264 aa hypothetical protein | |||
| 6 | 108 aa hypothetical protein | |||
| 7 | M | M.HpyKH41ORFA1P (100% identity) | M.HpyKH35ORFWP | |
| 8 | R | HpyKH41ORFA1P (100% identity) | HpyKH35ORFWP | |
| 10 | DNA cytosine methyltransferase | |||
| 8 | GIY-YIG nuclease family protein | |||
| 10 | M | M.HpyKH36ORFZP (99% identity) | M.HpyKH35ORFXP | |
| 11 | R | HpyKH36ORFZP (100% identity) | HpyKH35ORFXP | |
| 15 | 63 aa hypothetical protein | |||
| 13 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 15 | R | HpyNP10VIIP (99% identity) | GTNNAC | HpyKH35ORFIP |
| 16 | M | M.HpyT021XI (92% identity) | GTNNAC | M.HpyKH35ORFIP |
| 17 | ATP-dependent helicase | |||
| 16 | DNA topoisomerase subunit B | |||
| ??? | M | M.HpyKH27ORFUP (99% identity) | M.HpyKH35ORFTP | |
| 19 | R | HpyBG9VIIIP (97% identity) | HpyKH35ORFTP | |
| 21 | metalloendopeptidase like protein | |||
| 23 | -binding protein | |||
| ??? | RM | HpyIN6ORF2705P (93% identity) | HpyKH35ORFQP | |
| 30 | 485 aa hypothetical protein | |||
| 31 | DNA polymerase I | |||
| 32 | S | S.HpyBG5ORF7730P (44% identity) | S1.HpyKH35ORFMP | |
| 33 | S | S1.HpySW08ORF7425P (86% identity) | S2.HpyKH35ORFMP | |
| 34 | RM | HpyNP10ORF7465P (98% identity) | HpyKH35ORFMP | |
| 35 | ComF family protein | |||
| 36 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 37 | M | M.HpyLI08XI (97% identity) | GCGC | M.HpyKH35ORFCP |
| 38 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 22 | Laminin subunit alpha-2 precursor | |||
| ??? | R | HpyKH36ORFYP (100% identity) | HpyKH35ORFA1P | |
| ??? | M | M.HpyNP10ORF1440P (99% identity) | M.HpyKH35ORFA1P | |
| 29 | 202 aa hypothetical protein HMPREF1397_00627 | |||
| 42 | cysteine-rich protein X | |||
| ??? | M | DNA -methyltransferase | M.HpyKH35ORFYP | |
| 46 | 69 aa hypothetical protein HMPREF1400_01478 | |||
| 47 | 75 aa hypothetical protein HMPREF1407_01483 | |||
| 48 | R | HpyNP10IVP (93% identity) | CCGG | HpyKH35ORFZP |
| 49 | M | M.HpyU418II (100% identity) | CCGG | M.HpyKH35ORFZP |
| 50 | 65 aa hypothetical protein | |||
| 52 | 59 aa hypothetical protein | |||
| 53 | M | M.HpyNP10I (99% identity) | CATG | M.HpyKH35ORFHP |
| 54 | HAD family hydrolase | |||
| 59 | alpha-1,2-fucosyltransferase | |||
| 60 | M | M.HpyKH41ORFCP (99% identity) | GATC | M.HpyKH35ORFEP |
| 61 | 331 aa hypothetical protein | |||
| 75 | YjgP/YjgQ family permease | |||
| 76 | M | M2.HpyLI41IV (99% identity) | CCATC | M1.HpyKH35ORFPP |
| ??? | M | M2.HpyUM037VI (100% identity) | CCATC | M2.HpyKH35ORFPP |
| 78 | R | HpyKH26ORFLP (100% identity) | CCATC | HpyKH35ORFPP |
| 79 | outer membrane protein | |||
| 102 | 179 aa hypothetical protein | |||
| 105 | RM | HpyNP10ORF7225BP (77% identity) | HpyKH35ORFRP | |
| 106 | 970 aa hypothetical protein | |||
| 125 | sodium/proline symporter | |||
| 126 | M | DNA -methyltransferase | M1.HpyKH35ORFJP | |
| 127 | M | M.HpyUM037ORF8285P (62% identity) | M2.HpyKH35ORFJP | |
| 128 | 97 aa hypothetical protein | |||
| 129 | R | HpyNP10ORF275P (77% identity) | HpyKH35ORFJP | |
| 130 | DNA cytosine methyltransferase | |||
| 129 | 325 aa hypothetical protein | |||
| 130 | M | M2.HpyKH41ORFIP (100% identity) | M2.HpyKH35ORFKP | |
| 131 | M | M1.HpyNP10V (100% identity) | CCTC | M1.HpyKH35ORFKP |
| 133 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 163 | S41 family peptidase | |||
| ??? | R | HpyMA25ORF6550P (97% identity) | HpyKH35ORFNP | |
| 166 | M | M.HpyKH41ORFPP (100% identity) | M.HpyKH35ORFNP | |
| 167 | 72 aa hypothetical protein HMPREF1410_01611 | |||
| 166 | site-specific DNA-methyltransferase | |||
| ??? | M | HpyKH36ORFTP (90% identity) | M.HpyKH35ORFOP | |
| 171 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 139 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 140 | M | M.Hpybs1ORFFP (86% identity) | M.HpyKH35ORFBP | |
| 141 | Translation elongation factor LepA | |||
| 281 | elongation factor Ts | |||
| 283 | R | HpyL024VIP (99% identity) | TGCA | HpyKH35ORFFP |
| 285 | M | M.HpyPO18V (97% identity) | TGCA | M.HpyKH35ORFFP |
| 286 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 105 | class I SAM-dependent DNA methyltransferase | |||
| 106 | R | HpyMM05ORF7200P (95% identity) | HpyKH35ORFSP | |
| 109 | M | M.HpyGE3ORF7225P (95% identity) | M.HpyKH35ORFSP | |
| 110 | ATP-dependent DNA helicase | |||
| 182 | DNA-binding response regulator | |||
| ??? | M | M.HpyKH27ORFWP (98% identity) | M.HpyKH35ORFLP | |
| 185 | R | HpyKH36ORFVP (99% identity) | HpyKH35ORFLP | |
| 187 | rod shape-determining MreC family protein | |||
| 202 | DNA/RNA non-specific endonuclease | |||
| 203 | M | M.HpyGRE039XII (96% identity) | M.HpyKH35ORFDP | |
| 204 | R | HpySP101ORF6735P (92% identity) | HpyKH35ORFDP | |