Helicobacter pylori KH34 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori KH34 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,583,431 bp
GenBank #: PHLR00000000 (NZ_PHLR00000000)
REBASE acronym: HpyKH34
Org_num: 32012
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | Hpy2099ORF2290P (73% identity) | HpyKH34ORFLP | |
| 2 | M | M.HpyKH31ORFYP (95% identity) | M.HpyKH34ORFLP | |
| 3 | S | S.HpyKH33ORFJP (97% identity) | S.HpyKH34ORFLP | |
| 1 | S | S.HpyPR08ORF3845P (31% identity) | S.HpyKH34ORFVP | |
| ??? | M | M.HpyKH18ORFTP (92% identity) | M.HpyKH34ORFVP | |
| 5 | HrgA like protein | |||
| 28 | M48 family peptidase | |||
| 31 | R | HpyKH17ORFUP (94% identity) | HpyKH34ORFOP | |
| ??? | M | M.HpyKH39ORFSP (99% identity) | M.HpyKH34ORFOP | |
| 35 | S | S.HpyKH39ORFSP (100% identity) | S.HpyKH34ORFOP | |
| 36 | glutamine--fructose-6-phosphate transaminase | |||
| 93 | outer membrane beta-barrel protein HofF | |||
| 95 | S | S.HpyK025XIII (70% identity) | S.HpyKH34ORFNP | |
| 96 | cadmium-translocating P-type ATPase | |||
| 187 | hydroxyethylthiazole kinase | |||
| 188 | R | HpyKH39ORFVP (95% identity) | HpyKH34ORFRP | |
| 190 | S | S.HpyH014ORF4160P (41% identity) | S.HpyKH34ORFRP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 13 | R | HpyBG10VP (97% identity) | GTNNAC | HpyKH34ORFIP |
| 14 | M | M.HpySW33ORF5125P (90% identity) | GTNNAC | M.HpyKH34ORFIP |
| 15 | ATP-dependent helicase | |||
| 41 | HAD family hydrolase | |||
| 42 | M | M.HpyKH39ORFBP (96% identity) | CATG | M.HpyKH34ORFDP |
| 43 | IceA2 protein | |||
| 38 | alpha-1,2-fucosyltransferase | |||
| 41 | M | M.HpyBG2VI (98% identity) | GATC | M.HpyKH34ORFAP |
| 42 | R | HpyKH39ORFAP (99% identity) | GATC | HpyKH34ORFAP |
| 43 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 45 | 69 aa hypothetical protein N206_05345 | |||
| 46 | R | HpyFD423ORFTP (70% identity) | HpyKH34ORFEP | |
| 47 | metalloendopeptidase like protein | |||
| 42 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 43 | RM | HpyMM05ORF6330P (64% identity) | HpyKH34ORFMAP | |
| 44 | RM | DNA methyltransferase | HpyKH34ORFMBP | |
| 45 | RM | adenine specific DNA methyltransferase 2 domain protein | HpyKH34ORFMCP | |
| 47 | S41 family peptidase | |||
| 52 | catalase family peroxidase | |||
| 53 | R | HpyKH10ORFA1P (96% identity) | HpyKH34ORFYP | |
| 54 | M | M.HpyKH39ORFZP (100% identity) | M.HpyKH34ORFYP | |
| 55 | GIY-YIG nuclease family protein | |||
| 54 | DNA cytosine methyltransferase | |||
| 55 | R | HpyKH39ORFA1P (99% identity) | ACNGT | HpyKH34ORFZP |
| 57 | M | M.HpyKH39ORFA1P (99% identity) | ACNGT | M.HpyKH34ORFZP |
| 58 | 112 aa hypothetical protein | |||
| 61 | modification methylase VspI domain protein | |||
| 62 | M | M.HpyBG3III (97% identity) | ATTAAT | M.HpyKH34ORFA1P |
| 57 | 95 aa hypothetical protein | |||
| 58 | RM | HpySP05ORF7170P (91% identity) | HpyKH34ORFTP | |
| 60 | 108 aa hypothetical protein N207_00430 | |||
| 74 | -binding protein | |||
| ??? | RM | HpySG32ORF3805P (84% identity) | HpyKH34ORFUP | |
| 82 | restriction endonuclease | |||
| 73 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 74 | M | M.HpyNAB47ORFBP (98% identity) | TCNNGA | M.HpyKH34ORFBP |
| 75 | R | HpyKH39ORFDP (100% identity) | TCNNGA | HpyKH34ORFBP |
| 77 | Laminin subunit alpha-2 precursor | |||
| 83 | outer membrane protein | |||
| 85 | R | HpyU422IVP (96% identity) | CCATC | HpyKH34ORFJP |
| 86 | M | M1.HpyKH39ORFIP (100% identity) | CCATC | M1.HpyKH34ORFJP |
| 87 | M | M2.HpyKH39ORFIP (99% identity) | CCATC | M2.HpyKH34ORFJP |
| 88 | YjgP/YjgQ family permease | |||
| 104 | DNA cytosine methyltransferase | |||
| 105 | R | HpyKH39ORFPP (100% identity) | GTSAC | HpyKH34ORFPP |
| 106 | M | M.HpyKH39ORFPP (100% identity) | GTSAC | M.HpyKH34ORFPP |
| 107 | restriction endonuclease | |||
| 106 | site-specific DNA-methyltransferase | |||
| 107 | R | HpyKH17ORFOP (93% identity) | CCTC | HpyKH34ORFQP |
| 108 | DNA methyltransferase | |||
| 109 | M | M2.HpyGE16IVP (98% identity) | CCTC | M2.HpyKH34ORFQP |
| 111 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 127 | ComF family protein | |||
| 129 | RM | HpyFD662ORF165P (98% identity) | HpyKH34ORFWP | |
| 130 | S | S.HpyKH13ORFTP (93% identity) | S.HpyKH34ORFWP | |
| 131 | DNA polymerase I | |||
| 120 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 121 | M | M.HpyKH39ORFCP (100% identity) | M.HpyKH34ORFCP | |
| 122 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 164 | exodeoxyribonuclease VII large subunit | |||
| 165 | M | M.HpySP14ORF1505P (93% identity) | M.HpyKH34ORFFP | |
| 166 | 169 aa hypothetical protein HMPREF1401_01153 | |||
| 167 | 63 aa hypothetical protein | |||
| 168 | R | HpyUM067ORF2045P (84% identity) | HpyKH34ORFGP | |
| 169 | M | DNA -methyltransferase | M.HpyKH34ORFGP | |
| 170 | chaperone protein ClpB | |||
| 296 | Translation elongation factor LepA | |||
| 298 | M | M.Hpyfe123ORF5560P (99% identity) | M.HpyKH34ORFHP | |
| 299 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4 | biotin synthase | |||
| 6 | R | HpyKH40ORFKP (92% identity) | HpyKH34ORFKP | |
| 7 | M | M.HpySW05XIV (92% identity) | M.HpyKH34ORFKP | |
| 8 | DNA/RNA non-specific endonuclease | |||
| 25 | rod shape-determining MreC family protein | |||
| 26 | R | HpyFD703ORF7960P (95% identity) | HpyKH34ORFXP | |
| ??? | M | M.HpyKH44ORFVP (91% identity) | M.HpyKH34ORFXP | |
| 30 | DNA-binding response regulator | |||
| 51 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyUM067ORF4640P (96% identity) | M.HpyKH34ORFSP | |
| 55 | R | HpyMA02ORF7440P (93% identity) | HpyKH34ORFSP | |
| 57 | 95 aa hypothetical protein | |||