Helicobacter pylori KH31 |
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Putative Helicobacter pylori KH31 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,607,973 bp
GenBank #: PHLU00000000 (NZ_PHLU00000000)
REBASE acronym: HpyKH31
Org_num: 31940
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyKH29ORFPP (60% identity) | S.HpyKH31ORFSP | |
| 2 | R | HpyKH39ORFVP (96% identity) | HpyKH31ORFSP | |
| 5 | hydroxyethylthiazole kinase | |||
| 19 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | HpyMM01ORF2115P (93% identity) | HpyKH31ORFYP | |
| 23 | M | M.HpyUM114ORF3105P (96% identity) | M.HpyKH31ORFYP | |
| 24 | S | S.HpyK110ORF3970P (98% identity) | S.HpyKH31ORFYP | |
| 32 | HsdR family type I site-specific deoxyribonuclease | |||
| ??? | M | M.HpyFD535ORFD1P (47% identity) | M.HpyKH31ORFRP | |
| 37 | S | S.HpyMM08ORF7135P (49% identity) | S1.HpyKH31ORFRP | |
| 38 | S | S.HpyU116ORF7390P (24% identity) | S2.HpyKH31ORFRP | |
| 39 | 60 aa hypothetical protein | |||
| 42 | 127 aa hypothetical protein 1_17C_ICEHptfs4b_14 | |||
| ??? | M | M.HpyKH36ORFQP (95% identity) | M.HpyKH31ORFXP | |
| ??? | S | S.HpyMA16ORF4455P (43% identity) | S.HpyKH31ORFXP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5 | catalase family peroxidase | |||
| 6 | R | HpyNCI28ORFTP (85% identity) | ACGT | HpyKH31ORFZP |
| 9 | M | M.HpyFD423ORFOP (97% identity) | ACGT | M.HpyKH31ORFZP |
| 11 | GIY-YIG nuclease family protein | |||
| 9 | DNA cytosine methyltransferase | |||
| 11 | R | HpyMM11ORF2310P (79% identity) | ACNGT | HpyKH31ORFA1P |
| 13 | M | M.HpyKH45ORFA1P (98% identity) | ACNGT | M.HpyKH31ORFA1P |
| 14 | translational GTPase TypA | |||
| 16 | modification methylase VspI domain protein | |||
| 17 | M | M.HpyKH7ORFZP (98% identity) | ATTAAT | M.HpyKH31ORFB1P |
| 19 | 69 aa hypothetical protein N206_05345 | |||
| 20 | R | HpyIS2XIIP (79% identity) | HpyKH31ORFLP | |
| 21 | metalloendopeptidase like protein | |||
| 36 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 37 | M | M.HpyKH7ORFAP (97% identity) | M.HpyKH31ORFIP | |
| 38 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| ??? | hypothetical protein | |||
| 30 | M | M2.HpyLI01II (94% identity) | GAAGA | M1.HpyKH31ORFVP |
| 31 | M | M2.HpyKH39ORFYP (100% identity) | M2.HpyKH31ORFVP | |
| 32 | R | HpyKH39ORFYP (98% identity) | HpyKH31ORFVP | |
| 33 | DNA-binding response regulator | |||
| 18 | ATP-dependent helicase | |||
| 19 | M | M.HpyKH39ORFMP (97% identity) | GTNNAC | M.HpyKH31ORFKP |
| 20 | R | Hpyfe57ORF2840P (94% identity) | GTNNAC | HpyKH31ORFKP |
| 21 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 50 | serine acetyltransferase | |||
| 52 | M | M.HpyKH39ORFBP (97% identity) | M.HpyKH31ORFHP | |
| 53 | HAD family hydrolase | |||
| 60 | 969 aa hypothetical protein | |||
| ??? | RM | Hpy49ORF7525P (67% identity) | HpyKH31ORFQP | |
| 65 | 295 aa hypothetical protein HMPREF1411_00815 | |||
| 45 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 46 | RM | HpyKH17ORFHP (94% identity) | HpyKH31ORFTAP | |
| 47 | RM | HpyUBN18ORFD1P (89% identity) | HpyKH31ORFTBP | |
| 48 | S41 family peptidase | |||
| 94 | 68 aa hypothetical protein | |||
| 95 | M | M.HpyU416XIII (98% identity) | TGCA | M.HpyKH31ORFGP |
| 96 | R | HpyP002XIVP (98% identity) | TGCA | HpyKH31ORFGP |
| 98 | anthranilate synthase component I | |||
| 80 | Laminin subunit alpha-2 precursor | |||
| 82 | R | type II restriction endonuclease | TCNNGA | HpyKH31ORFJP |
| 84 | M | M.HpyKH11ORFEP (98% identity) | TCNNGA | M.HpyKH31ORFJP |
| 85 | 214 aa hypothetical protein HMPREF1397_00627 | |||
| 132 | ComF family protein | |||
| 134 | RM | HpyKH36ORFPP (98% identity) | HpyKH31ORFOP | |
| 135 | S | S.HpyMT5118ORF6910P (49% identity) | S1.HpyKH31ORFOP | |
| 137 | S | S.HpyMA16ORF7285P (44% identity) | S2.HpyKH31ORFOP | |
| 139 | DNA polymerase I | |||
| 124 | -binding protein | |||
| 125 | RM | HpyMA25ORF3405P (89% identity) | HpyKH31ORFEP | |
| 128 | restriction endonuclease | |||
| 153 | uncharacterized protein | |||
| 155 | M | M.HpySG13VI (100% identity) | CTNAG | M.HpyKH31ORFCP |
| 156 | R | HpyUM084ORF1020P (100% identity) | CTNAG | HpyKH31ORFCP |
| 159 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 152 | 3'-5' exonuclease | |||
| 153 | M | M.HpyKH10ORFFP (99% identity) | CCNNGG | M.HpyKH31ORFFP |
| 154 | R | HpyUM067ORF4025P (100% identity) | CCNNGG | HpyKH31ORFFP |
| 217 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 218 | M | M1.HpyMA04VII (98% identity) | CCTC | M.HpyKH31ORFAP |
| 220 | sodium/proline symporter | |||
| 231 | chaperone protein ClpB | |||
| 235 | M | M.HpyL010VI (99% identity) | CCGG | M.HpyKH31ORFMP |
| 236 | R | HpySP15VIIIP (74% identity) | CCGG | HpyKH31ORFMP |
| 238 | DNA -methyltransferase | |||
| 236 | endonuclease | |||
| 238 | M | M.HpyKH44ORFCP (98% identity) | M.HpyKH31ORFNP | |
| 239 | exodeoxyribonuclease VII large subunit | |||
| 293 | 138 aa hypothetical protein | |||
| 295 | M | M.HpyU435VII (96% identity) | GATC | M.HpyKH31ORFBP |
| 296 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3 | biotin synthase | |||
| 5 | R | HpyKH32ORFRP (92% identity) | HpyKH31ORFWP | |
| 6 | M | M.HpyPO11ORF6810P (93% identity) | M.HpyKH31ORFWP | |
| 7 | DNA/RNA non-specific endonuclease | |||
| 16 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 17 | R | HpyKH13ORFCP (95% identity) | HpyKH31ORFDP | |
| 18 | M | M.HpyG011ORF3010P (95% identity) | M.HpyKH31ORFDP | |
| 19 | 83 aa hypothetical protein HMPREF1403_00513 | |||
| 25 | 67 aa hypothetical protein | |||
| 26 | R | HpyMM11ORF6450P (93% identity) | HpyKH31ORFUP | |
| ??? | M | M.HpyKH37ORFYP (95% identity) | M.HpyKH31ORFUP | |
| 30 | DUF1887 family protein | |||
| 56 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyQ35ORFFP (97% identity) | M.HpyKH31ORFPP | |
| 60 | R | HpyUM084ORF2180P (95% identity) | HpyKH31ORFPP | |
| 62 | 95 aa hypothetical protein | |||