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Putative Helicobacter pylori KH30 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,580,459 bp
GenBank #: PHLV00000000 (NZ_PHLV00000000)
REBASE acronym: HpyKH30
Org_num: 31939
All begin ORF_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
18 | 631 aa hypothetical protein U063_1207 | |||
??? | R | Hpy476CORFWP (89% identity) | HpyKH30ORFNP | |
21 | M | M.HpyIN5ORF2140P (100% identity) | M.HpyKH30ORFNP | |
22 | S | S.HpyIN5ORF2140P (100% identity) | S.HpyKH30ORFNP | |
23 | polyphosphate kinase 1 | |||
183 | hydroxyethylthiazole kinase | |||
??? | R | HpyIN5ORF4075P (100% identity) | HpyKH30ORFMP | |
188 | S | S.HpyIN5ORF4075P (100% identity) | S.HpyKH30ORFMP | |
??? | M | M.HpyIN5ORF4075P (95% identity) | M.HpyKH30ORFMP | |
195 | 68 aa hypothetical protein 1_17C_ICEHptfs4b_14 | |||
234 | M48 family peptidase | |||
237 | R | HpyIN5ORF7220P (99% identity) | HpyKH30ORFKP | |
??? | M | M.HpyIN5ORF7220P (100% identity) | M.HpyKH30ORFKP | |
242 | S | S.HpyIN5ORF7220P (100% identity) | S.HpyKH30ORFKP | |
243 | cag pathogenicity island protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1 | M | M.HpyIN5III (100% identity) | ATTAAT | M.HpyKH30ORFXP |
2 | modification methylase VspI domain protein | |||
5 | 112 aa hypothetical protein | |||
6 | M | M.HpyIN5II (100% identity) | ACNGT | M.HpyKH30ORFYP |
7 | R | HpyIN5IIP (100% identity) | ACNGT | HpyKH30ORFYP |
9 | DNA cytosine methyltransferase | |||
7 | GIY-YIG nuclease family protein | |||
9 | M | M.HpyIN5ORF2240P (100% identity) | ACGT | M.HpyKH30ORFZP |
??? | R | HpyIN5ORF2240P (100% identity) | ACGT | HpyKH30ORFZP |
14 | 65 aa hypothetical protein HPOKI128_02415 | |||
10 | S41 family peptidase | |||
??? | R | HpyIN5ORF6390P (100% identity) | HpyKH30ORFVP | |
??? | M | M.HpyIN5ORF6390P (100% identity) | M.HpyKH30ORFVP | |
16 | adenine specific DNA methyltransferase | |||
7 | HrgA protein, partial | |||
9 | M | M.HpyIN5VIII (100% identity) | GATC | M.HpyKH30ORFGP |
10 | alpha-1,2-fucosyltransferase | |||
??? | hypothetical protein | |||
16 | RM | HpyPE05ORF6620P (29% identity) | HpyKH30ORFWBP | |
17 | RM | HpyIN5ORF6405P (71% identity) | HpyKH30ORFWAP | |
18 | carboxylating nicotinate-nucleotide diphosphorylase | |||
17 | DNA topoisomerase subunit B | |||
18 | M | M.Hpy99XII (96% identity) | GTAC | M.HpyKH30ORFRP |
??? | R | HpyIN5ORF2345P (95% identity) | GTAC | HpyKH30ORFRP |
22 | metalloendopeptidase like protein | |||
37 | 91 aa hypothetical protein | |||
38 | M | M.HpyIN5XIII (98% identity) | GCGC | M.HpyKH30ORFFP |
39 | 144 aa hypothetical protein HMPREF1427_00277 | |||
23 | Laminin subunit alpha-2 precursor | |||
26 | R | HpyPU007ORF4965P (61% identity) | TCNNGA | HpyKH30ORFEP |
27 | M | M.HpyKH12ORFFP (100% identity) | TCNNGA | M.HpyKH30ORFEP |
28 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
16 | ATP-dependent helicase | |||
18 | M | M.HpyIN5IX (93% identity) | GTNNAC | M.HpyKH30ORFCP |
19 | R | HpyIN5IXP (100% identity) | GTNNAC | HpyKH30ORFCP |
20 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
29 | DNA-binding response regulator | |||
30 | R | HpyIN5VIIP (98% identity) | GAAGA | HpyKH30ORFTP |
31 | M | M1.HpyIN5VII (100% identity) | GAAGA | M1.HpyKH30ORFTP |
32 | M | M2.HpyIN5VII (95% identity) | GAAGA | M2.HpyKH30ORFTP |
33 | site-specific DNA-methyltransferase | |||
49 | sodium/proline symporter | |||
50 | R | HpyIN5VP (97% identity) | CCTC | HpyKH30ORFLP |
51 | DNA methyltransferase | |||
52 | M | M2.HpyIN5VP (100% identity) | CCTC | M2.HpyKH30ORFLP |
55 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
50 | exodeoxyribonuclease VII large subunit | |||
51 | M | M.HpyIN5X (100% identity) | TCGA | M.HpyKH30ORFOP |
52 | 204 aa hypothetical protein HMPREF1401_01153 | |||
53 | 88 aa hypothetical protein | |||
54 | R | HpyIN5IVP (93% identity) | CCGG | HpyKH30ORFPP |
55 | M | M.HpyIN5IV (100% identity) | CCGG | M.HpyKH30ORFPP |
56 | chaperone protein ClpB | |||
61 | HAD family hydrolase | |||
62 | M | M.HpyIN5I (100% identity) | CATG | M.HpyKH30ORFBP |
63 | ulcer-associated gene restriction endonuclease | |||
80 | outer membrane protein | |||
82 | RM | helicase | HpyKH30ORFQBP | |
84 | RM | HpyIN5ORF3200P (89% identity) | HpyKH30ORFQAP | |
88 | -binding protein | |||
130 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
131 | R | HpyKH9ORFCP (99% identity) | CTNAG | HpyKH30ORFAP |
133 | M | M.HpyIN5VI (100% identity) | CTNAG | M.HpyKH30ORFAP |
134 | uncharacterized protein | |||
204 | cytochrome c1 | |||
205 | R | HpyIN5XIIP (100% identity) | TGCA | HpyKH30ORFDP |
207 | M | M.HpyIN5XII (100% identity) | TGCA | M.HpyKH30ORFDP |
208 | 68 aa hypothetical protein | |||
264 | 970 aa hypothetical protein | |||
267 | RM | HpyIN5XV (100% identity) | HpyKH30ORFJP | |
269 | 65 aa hypothetical protein | |||
333 | ComF family protein | |||
335 | R | HpyIN5ORF6905P (98% identity) | HpyKH30ORFHP | |
??? | M | M2.HpyIN5ORF6905P (100% identity) | M1.HpyKH30ORFHP | |
338 | M | M2.HpyU303IX (100% identity) | M2.HpyKH30ORFHP | |
339 | transcriptional regulator | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
32 | DUF1887 family protein | |||
33 | M | M.HpyIN5XIV (100% identity) | M.HpyKH30ORFUP | |
34 | R | HpyIN5XIVP (100% identity) | HpyKH30ORFUP | |
36 | 66 aa hypothetical protein | |||
53 | DNA/RNA non-specific endonuclease | |||
54 | M | M.HpyIN5ORF6540P (100% identity) | M.HpyKH30ORFSP | |
55 | R | HpyIN5ORF6540P (98% identity) | HpyKH30ORFSP | |
259 | ATP-dependent DNA helicase | |||
??? | M | M.HpyIN5ORF7145P (100% identity) | M.HpyKH30ORFIP | |
264 | R | HpyIN5ORF7145P (100% identity) | HpyKH30ORFIP | |
267 | class I SAM-dependent DNA methyltransferase |