Helicobacter pylori KH29 |
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Putative Helicobacter pylori KH29 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,605,007 bp
GenBank #: PHLW00000000 (NZ_PHLW00000000)
REBASE acronym: HpyKH29
Org_num: 31938
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 18 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | HpyIN4ORF2145P (99% identity) | HpyKH29ORFZP | |
| 23 | M | M.HpyIN4ORF2145P (100% identity) | M.HpyKH29ORFZP | |
| 24 | S | S.HpyIN4ORF2145P (100% identity) | S.HpyKH29ORFZP | |
| 89 | hydroxyethylthiazole kinase | |||
| 90 | R | HpyIN4ORF3915P (100% identity) | HpyKH29ORFPP | |
| 93 | S | S.HpyIN4ORF3915P (100% identity) | S.HpyKH29ORFPP | |
| ??? | M | M.HpyIN4ORF3915P (94% identity) | M.HpyKH29ORFPP | |
| 98 | phosphatase PAP2 family protein | |||
| 301 | M48 family peptidase | |||
| 304 | R | HpyIN4XVP (99% identity) | HpyKH29ORFEP | |
| 305 | M | M.HpyIN4XV (100% identity) | M.HpyKH29ORFEP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6 | glycosyltransferase family 8 protein | |||
| 7 | M | M.HpyKH2ORFIP (100% identity) | GAATTC | M.HpyKH29ORFHP |
| 8 | R | HpyIN4VP (89% identity) | GAATTC | HpyKH29ORFHP |
| 9 | UDP-N-acetylmuramate dehydrogenase | |||
| 7 | 64 aa hypothetical protein | |||
| 8 | RM | HpyIN4ORF7025P (61% identity) | HpyKH29ORFUAP | |
| 11 | RM | class I SAM-dependent DNA methyltransferase | HpyKH29ORFUBP | |
| 12 | 95 aa hypothetical protein HMPREF1393_01376, partial | |||
| 7 | catalase family peroxidase | |||
| 10 | M | M.HpyIN4ORF2245P (100% identity) | M.HpyKH29ORFA1P | |
| 11 | GIY-YIG nuclease family protein | |||
| 10 | DNA cytosine methyltransferase | |||
| 11 | R | HpyNP13IIP (100% identity) | ACNGT | HpyKH29ORFB1P |
| 13 | M | M.HpyIN4II (100% identity) | ACNGT | M.HpyKH29ORFB1P |
| 14 | 108 aa hypothetical protein | |||
| 9 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 10 | M | M.HpyIN4XII (100% identity) | GCGC | M.HpyKH29ORFFP |
| 11 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 17 | modification methylase VspI domain protein | |||
| 18 | M | M.HpyIN4XIII (100% identity) | ATTAAT | M.HpyKH29ORFC1P |
| 17 | adenine specific DNA methyltransferase | |||
| ??? | R | HpyIN4ORF6330P (100% identity) | HpyKH29ORFYP | |
| 20 | M | M.HpyPORF1318P (98% identity) | M.HpyKH29ORFYP | |
| 21 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 19 | ATP-dependent helicase | |||
| 21 | M | M.HpyIN4VII (93% identity) | GTNNAC | M.HpyKH29ORFGP |
| 22 | R | HpyIN4VIIP (100% identity) | GTNNAC | HpyKH29ORFGP |
| 23 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 32 | DNA-binding response regulator | |||
| 33 | R | HpyIN4IVP (100% identity) | GAAGA | HpyKH29ORFWP |
| 34 | M | M1.HpyIN4IV (100% identity) | GAAGA | M1.HpyKH29ORFWP |
| ??? | M | M2.HpyU204VIII (100% identity) | GAAGA | M2.HpyKH29ORFWP |
| 36 | DNA -methyltransferase | |||
| 40 | 5'-nucleotidase protein | |||
| 41 | M | M.HpyIN4ORF535P (99% identity) | M.HpyKH29ORFLP | |
| 42 | restriction endonuclease | |||
| 38 | outer membrane protein | |||
| 39 | R | HpyIN4ORF7120P (100% identity) | HpyKH29ORFSP | |
| ??? | M | M1.HpyIN4ORF7120P (55% identity) | M.HpyKH29ORFSP | |
| 42 | YjgP/YjgQ family permease | |||
| 36 | Laminin subunit alpha-2 precursor | |||
| 38 | R | HpyIN4XP (100% identity) | TCNNGA | HpyKH29ORFCP |
| 39 | M | M.HpyIN4X (100% identity) | TCNNGA | M.HpyKH29ORFCP |
| 40 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 48 | exodeoxyribonuclease VII large subunit | |||
| 49 | M | M.HpyIN4IX (98% identity) | TCGA | M.HpyKH29ORFMP |
| 50 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 50 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 51 | R | 184 aa hypothetical protein HMPREF1415_00409 | CCGG | HpyKH29ORFNP |
| 52 | M | M.HpyIN4III (100% identity) | CCGG | M.HpyKH29ORFNP |
| 53 | chaperone protein ClpB | |||
| 49 | outer membrane protein | |||
| 50 | M | M.HpyIN4ORF5380P (99% identity) | TCNGA | M.HpyKH29ORFAP |
| 51 | R | HpyF17I (73% identity) | TCNGA | HpyKH29ORFAP |
| 53 | 66 aa hypothetical protein | |||
| 54 | alpha-1,2-fucosyltransferase | |||
| 55 | M | M.HpyIN4VI (100% identity) | GATC | M.HpyKH29ORFKP |
| ??? | R | HpyKH2ORFKP (100% identity) | GATC | HpyKH29ORFKP |
| 59 | tetratricopeptide TPR_2 repeat protein | |||
| 85 | ComF family protein | |||
| 86 | RM | HpyIN4ORF7260P (100% identity) | HpyKH29ORFRP | |
| 87 | S | S.HpyIN4ORF7260P (52% identity) | S1.HpyKH29ORFRP | |
| 89 | S | S.HpyIN4ORF7260P (44% identity) | S2.HpyKH29ORFRP | |
| 90 | DNA polymerase I | |||
| 84 | outer membrane protein | |||
| 85 | RM | HpyIN4ORF3030P (56% identity) | HpyKH29ORFQBP | |
| 86 | RM | HpyIN4ORF3030P (42% identity) | HpyKH29ORFQAP | |
| 88 | -binding protein | |||
| 110 | HAD family hydrolase | |||
| 111 | M | M.HpyIN4I (100% identity) | CATG | M.HpyKH29ORFOP |
| 114 | R | HpyIN4IP (100% identity) | CATG | HpyKH29ORFOP |
| 117 | serine acetyltransferase | |||
| 121 | sodium/proline symporter | |||
| 122 | R | HpyKH2ORFMP (99% identity) | GTSAC | HpyKH29ORFIP |
| 123 | M | M.HpyKH2ORFMP (100% identity) | GTSAC | M.HpyKH29ORFIP |
| 124 | DNA cytosine methyltransferase | |||
| 123 | site-specific DNA-methyltransferase | |||
| ??? | R | HpyIN4ORF255P (99% identity) | HpyKH29ORFJP | |
| ??? | M | M2.HpyIN4ORF255P (100% identity) | M2.HpyKH29ORFJP | |
| 131 | M | M1.HpyIN4ORF255P (100% identity) | CCTC | M1.HpyKH29ORFJP |
| 133 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 162 | Translation elongation factor LepA | |||
| 164 | M | M.HpyUSU101ORF2045P (100% identity) | M.HpyKH29ORFBP | |
| 165 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 278 | anthranilate synthase component I TrpE domain protein | |||
| 279 | R | HpyIN4XIP (100% identity) | TGCA | HpyKH29ORFDP |
| 280 | M | M.HpyIN4XI (100% identity) | TGCA | M.HpyKH29ORFDP |
| 281 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3 | 118 aa hypothetical protein | |||
| 4 | R | HpyIN4ORF7015P (93% identity) | HpyKH29ORFTP | |
| 7 | 64 aa hypothetical protein | |||
| ??? | DUF1887 family protein | |||
| ??? | M | M.HpyIN4ORF6410P (97% identity) | M.HpyKH29ORFXP | |
| 38 | R | HpyIN4ORF6410P (100% identity) | HpyKH29ORFXP | |
| 40 | 66 aa hypothetical protein | |||
| 55 | DNA/RNA non-specific endonuclease | |||
| 56 | M | M.HpyIN4ORF6470P (100% identity) | M.HpyKH29ORFVP | |
| 58 | R | HpyIN4ORF6470P (98% identity) | HpyKH29ORFVP | |
| 59 | biotin synthase | |||