Helicobacter pylori KH28 |
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Putative Helicobacter pylori KH28 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,679,991 bp
GenBank #: PHLX00000000 (NZ_PHLX00000000)
REBASE acronym: HpyKH28
Org_num: 31937
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 60 | type I restriction endonuclease | |||
| ??? | M | M.HpyIN3ORF4035P (100% identity) | M.HpyKH28ORFVP | |
| 63 | S | S.HpyIN3ORF4035P (100% identity) | S.HpyKH28ORFVP | |
| 64 | R | HpyIN3ORF4035P (96% identity) | HpyKH28ORFVP | |
| 67 | hydroxyethylthiazole kinase | |||
| 109 | M48 family peptidase | |||
| 112 | R | HpyIN3XIIP (99% identity) | HpyKH28ORFCP | |
| 113 | M | M.HpyIN3XII (100% identity) | M.HpyKH28ORFCP | |
| 165 | polyphosphate kinase 1 | |||
| 166 | S | S.HpyIN3VII (100% identity) | S.HpyKH28ORFAP | |
| 167 | M | M.HpyIN3VII (100% identity) | M.HpyKH28ORFAP | |
| 168 | R | HpyIN3VIIP (100% identity) | HpyKH28ORFAP | |
| 169 | 631 aa hypothetical protein U063_1207 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 13 | R | HpyIN3XP (100% identity) | GTNNAC | HpyKH28ORFFP |
| 14 | M | M.HpyIN3X (93% identity) | GTNNAC | M.HpyKH28ORFFP |
| 16 | ATP-dependent helicase | |||
| 29 | 67 aa hypothetical protein | |||
| 30 | RM | HpyIN3ORF7520P (100% identity) | HpyKH28ORFUP | |
| 32 | DUF4065 domain-containing protein | |||
| 35 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 36 | M | M.HpyIN3XV (98% identity) | M.HpyKH28ORFDP | |
| 37 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 38 | alpha-1,2-fucosyltransferase | |||
| 40 | M | M.HpyIN3IX (100% identity) | GATC | M.HpyKH28ORFMP |
| ??? | R | HpyIN3IXP (91% identity) | GATC | HpyKH28ORFMP |
| 44 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 54 | exodeoxyribonuclease VII large subunit | |||
| 55 | M | M.HpyNCI22IX (98% identity) | TCGA | M.HpyKH28ORFWP |
| 57 | endonuclease MjaVIP | |||
| 55 | DNA -methyltransferase | |||
| 57 | R | HpyIN3ORF1290P (86% identity) | CCGG | HpyKH28ORFXP |
| 58 | M | M.HpyIN3V (100% identity) | CCGG | M.HpyKH28ORFXP |
| 59 | chaperone protein ClpB | |||
| 54 | outer membrane protein | |||
| 56 | R | HpyIN3IVP (100% identity) | CCATC | HpyKH28ORFSP |
| 57 | M | M2.HpyIN3IV (93% identity) | CCATC | M1.HpyKH28ORFSP |
| 58 | M | M2.HpySW30VIII (100% identity) | CCATC | M2.HpyKH28ORFSP |
| 59 | YjgP/YjgQ family permease | |||
| 85 | elongation factor Ts | |||
| 87 | R | HpyIN3XIVP (100% identity) | TGCA | HpyKH28ORFBP |
| 89 | M | M.HpyIN3XIV (100% identity) | TGCA | M.HpyKH28ORFBP |
| 90 | 68 aa hypothetical protein | |||
| 76 | 457 aa hypothetical protein | |||
| 77 | RM | HpyIN3ORF3175P (78% identity) | HpyKH28ORFZBP | |
| 80 | RM | DEAD/DEAH box helicase | HpyKH28ORFZAP | |
| 81 | -binding protein | |||
| 81 | Laminin subunit alpha-2 precursor | |||
| 84 | R | HpyIN3XIP (100% identity) | TCNNGA | HpyKH28ORFEP |
| 85 | M | M.HpyIN3XI (100% identity) | TCNNGA | M.HpyKH28ORFEP |
| 86 | 177 aa hypothetical protein HMPREF1397_00627 | |||
| 113 | sodium/proline symporter | |||
| 114 | R | HpyIN3VIP (83% identity) | CCTC | HpyKH28ORFLP |
| 115 | M | M2.HpyIN3VIP (100% identity) | CCTC | M2.HpyKH28ORFLP |
| 116 | M | M1.HpyIN3VI (100% identity) | CCTC | M1.HpyKH28ORFLP |
| 120 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 100 | ComF family protein | |||
| 102 | RM | HpyKH1ORFMP (100% identity) | HpyKH28ORFRP | |
| 103 | S | S.HpyIN3ORF7285P (100% identity) | S.HpyKH28ORFRP | |
| 104 | DNA polymerase I | |||
| 105 | HAD family hydrolase | |||
| 106 | M | M.HpyIN3I (100% identity) | CATG | M.HpyKH28ORFKP |
| ??? | R | HpyIN3IP (100% identity) | CATG | HpyKH28ORFKP |
| 112 | serine acetyltransferase | |||
| 120 | metalloendopeptidase like protein | |||
| ??? | R | HpyIN3ORF2370P (94% identity) | GTAC | HpyKH28ORFQP |
| 124 | M | M.Hpy13AEK8ORFSP (97% identity) | GTAC | M.HpyKH28ORFQP |
| 125 | DNA topoisomerase subunit B | |||
| 147 | catalase family peroxidase | |||
| 149 | M | M.HpyIN3ORF2275P (74% identity) | M.HpyKH28ORFNP | |
| 150 | GIY-YIG nuclease family protein | |||
| 149 | DNA cytosine methyltransferase | |||
| 150 | R | HpyIN3IIP (100% identity) | ACNGT | HpyKH28ORFOP |
| 152 | M | M.HpyIN3II (100% identity) | ACNGT | M.HpyKH28ORFOP |
| 153 | 112 aa hypothetical protein | |||
| 157 | 264 aa hypothetical protein | |||
| 158 | M | M.HpyIN3III (100% identity) | ATTAAT | M.HpyKH28ORFPP |
| 336 | S41 family peptidase | |||
| ??? | R | HpyIN3ORF6635P (100% identity) | HpyKH28ORFIP | |
| 340 | M | M.HpyUM023ORF560P (98% identity) | M.HpyKH28ORFIP | |
| 341 | DNA methyltransferase | |||
| 340 | site-specific DNA-methyltransferase | |||
| 341 | RM | DNA methyltransferase | HpyKH28ORFJBP | |
| 342 | RM | HpyIN3ORF6640P (92% identity) | HpyKH28ORFJAP | |
| 343 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 354 | DNA-binding response regulator | |||
| 355 | R | HpyIN3VIIIP (100% identity) | GAAGA | HpyKH28ORFHP |
| 356 | M | M1.HpyIN3VIII (95% identity) | GAAGA | M1.HpyKH28ORFHP |
| 357 | M | M2.HpyMA17V (95% identity) | GAAGA | M2.HpyKH28ORFHP |
| 358 | restriction endonuclease subunit R | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 16 | R | HpyIN3ORF2810P (100% identity) | HpyKH28ORFYP | |
| ??? | M | M.HpyIN3ORF2810P (100% identity) | M.HpyKH28ORFYP | |
| 20 | 81 aa hypothetical protein HMPREF1403_00513 | |||
| 21 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyIN3ORF7535P (100% identity) | M.HpyKH28ORFTP | |
| 26 | R | HpyIN3ORF7535P (100% identity) | HpyKH28ORFTP | |
| 28 | 723 aa hypothetical protein | |||
| 375 | DNA/RNA non-specific endonuclease | |||
| 376 | M | M.HpyIN3ORF6770P (100% identity) | M.HpyKH28ORFGP | |
| 377 | R | HpyIN3ORF6770P (95% identity) | HpyKH28ORFGP | |