Helicobacter pylori KH27 |
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Putative Helicobacter pylori KH27 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,635,544 bp
GenBank #: PHLY00000000 (NZ_PHLY00000000)
REBASE acronym: HpyKH27
Org_num: 31936
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | phosphatase PAP2 family protein | |||
| 2 | M | M.HpyIN2IX (100% identity) | M.HpyKH27ORFHP | |
| 3 | S | S.HpyIN2IX (100% identity) | S.HpyKH27ORFHP | |
| 4 | R | HpyIN2IXP (99% identity) | HpyKH27ORFHP | |
| 7 | hydroxyethylthiazole kinase | |||
| 20 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | HpyIN2ORF4550P (100% identity) | HpyKH27ORFLP | |
| ??? | M | M.HpyIN2ORF4550P (99% identity) | M.HpyKH27ORFLP | |
| 27 | S | S.HpyIN2ORF4550P (100% identity) | S.HpyKH27ORFLP | |
| 28 | polyphosphate kinase 1 | |||
| 251 | M48 family peptidase | |||
| 254 | R | HpyIN2ORF7555P (96% identity) | HpyKH27ORFCP | |
| 255 | M | M.HpyIN2ORF7555P (99% identity) | M.HpyKH27ORFCP | |
| ??? | S | S.HpyIN2ORF7555P (55% identity) | S.HpyKH27ORFCP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | 75 aa hypothetical protein HPPC18_05540 | |||
| 2 | M | M.HpyIN2ORF1285P (100% identity) | M.HpyKH27ORFGP | |
| 3 | exodeoxyribonuclease VII large subunit | |||
| 1 | M | M.HpyNP10II (100% identity) | ATTAAT | M.HpyKH27ORFZP |
| 2 | 264 aa hypothetical protein | |||
| 5 | 162 aa hypothetical protein | |||
| 6 | M | M.HpyT003II (89% identity) | M.HpyKH27ORFA1P | |
| 7 | R | HpySP406ORF2245P (82% identity) | HpyKH27ORFA1P | |
| 9 | DNA cytosine methyltransferase | |||
| 7 | GIY-YIG nuclease family protein | |||
| 9 | M | M.HpyIN2ORF4445P (100% identity) | ACGT | M.HpyKH27ORFB1P |
| 10 | R | HpyIN2ORF4445P (100% identity) | ACGT | HpyKH27ORFB1P |
| 11 | catalase family peroxidase | |||
| 10 | S41 family peptidase | |||
| ??? | R | HpyKH15ORFB1P (98% identity) | HpyKH27ORFXP | |
| 13 | M | M.HpyPORF1318P (98% identity) | M.HpyKH27ORFXP | |
| 14 | DNA methyltransferase | |||
| 16 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 17 | M | M.HpyIN2VIII (100% identity) | TCNNGA | M.HpyKH27ORFEP |
| 18 | R | HpyIN2VIIIP (100% identity) | TCNNGA | HpyKH27ORFEP |
| 20 | Laminin subunit alpha-2 precursor | |||
| 13 | site-specific DNA-methyltransferase | |||
| 14 | RM | DNA methyltransferase | HpyKH27ORFYBP | |
| 15 | RM | HpyIN2ORF6650P (68% identity) | HpyKH27ORFYAP | |
| 16 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 15 | alpha-1,2-fucosyltransferase | |||
| 17 | M | M.HpyIN2VI (100% identity) | GATC | M.HpyKH27ORFBP |
| 18 | 331 aa hypothetical protein | |||
| 18 | DNA topoisomerase subunit B | |||
| ??? | M | M.HpyIN2ORF1365P (100% identity) | M.HpyKH27ORFUP | |
| ??? | R | HpyNAD1ORFJP (99% identity) | HpyKH27ORFUP | |
| 24 | metalloendopeptidase like protein | |||
| 32 | DNA polymerase I | |||
| 33 | S | S.HpyIN2ORF7455P (100% identity) | S.HpyKH27ORFIP | |
| ??? | RM | HpyIN2ORF7455P (99% identity) | HpyKH27ORFIP | |
| 36 | ComF family protein | |||
| 34 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 35 | M | M.HpyIN2XI (97% identity) | GCGC | M.HpyKH27ORFRP |
| 36 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 16 | ATP-dependent helicase | |||
| 17 | M | M.HpyIN2VII (93% identity) | GTNNAC | M.HpyKH27ORFFP |
| 18 | R | HpyIN2VIIP (100% identity) | GTNNAC | HpyKH27ORFFP |
| 19 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 40 | cysteine-rich protein X | |||
| ??? | M | DNA -methyltransferase | M.HpyKH27ORFSP | |
| 44 | 69 aa hypothetical protein HMPREF1400_01478 | |||
| 45 | 75 aa hypothetical protein HMPREF1407_01483 | |||
| 46 | R | HpyKH36ORFSP (85% identity) | CCGG | HpyKH27ORFTP |
| 47 | M | M.HpyIN2ORF5415P (99% identity) | CCGG | M.HpyKH27ORFTP |
| 48 | chaperone protein ClpB | |||
| 62 | HAD family hydrolase | |||
| 63 | M | M.HpyKH39ORFBP (96% identity) | M.HpyKH27ORFDP | |
| 64 | IceA2 protein | |||
| 76 | YjgP/YjgQ family permease | |||
| 77 | M | M2.HpyNP10III (99% identity) | CCATC | M1.HpyKH27ORFQP |
| ??? | M | M2.HpyUM037VI (100% identity) | CCATC | M2.HpyKH27ORFQP |
| ??? | R | HpyIN2IIIP (100% identity) | CCATC | HpyKH27ORFQP |
| 81 | outer membrane protein | |||
| 75 | sodium/proline symporter | |||
| 76 | M | M.HpyIN2V (100% identity) | CCTTC | M.HpyKH27ORFJP |
| 77 | 97 aa hypothetical protein | |||
| 78 | R | HpyKH26ORFRP (99% identity) | HpyKH27ORFJP | |
| 79 | DNA cytosine methyltransferase | |||
| 78 | 325 aa hypothetical protein | |||
| 79 | M | M.HpyKH36ORFLP (45% identity) | M2.HpyKH27ORFKP | |
| 80 | M | M1.HpyNP10V (100% identity) | CCTC | M1.HpyKH27ORFKP |
| 82 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 103 | DUF4065 domain-containing protein | |||
| 104 | RM | HpyIN2X (100% identity) | HpyKH27ORFOP | |
| 105 | 95 aa hypothetical protein | |||
| 101 | elongation factor P | |||
| 103 | M | M1.HpyIN2ORF865P (100% identity) | M.HpyKH27ORFMP | |
| 104 | DNA cytosine methyltransferase | |||
| 105 | R | R1.HpySP11ORF850P (100% identity) | R1.HpyKH27ORFMP | |
| 107 | R | R2.HpyGCT56ORFE1P (100% identity) | R2.HpyKH27ORFMP | |
| 108 | pseudaminic acid synthase | |||
| 93 | -binding protein | |||
| ??? | RM | HpyIN2ORF2950P (100% identity) | HpyKH27ORFNP | |
| 101 | 485 aa hypothetical protein | |||
| 145 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 146 | M | M.Hpybs1ORFFP (86% identity) | M.HpyKH27ORFAP | |
| 147 | Translation elongation factor LepA | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 27 | DNA-binding response regulator | |||
| ??? | M | M.HpyKH35ORFLP (98% identity) | M.HpyKH27ORFWP | |
| 31 | R | HpyIN2ORF6710P (99% identity) | HpyKH27ORFWP | |
| 33 | rod shape-determining MreC family protein | |||
| 49 | DNA/RNA non-specific endonuclease | |||
| 50 | M | M.HpyIN2ORF6780P (100% identity) | M.HpyKH27ORFVP | |
| 51 | R | HpyIN2ORF6780P (95% identity) | HpyKH27ORFVP | |
| 52 | biotin synthase | |||
| 105 | 95 aa hypothetical protein | |||
| ??? | R | HpyIN2ORF7205P (99% identity) | HpyKH27ORFPP | |
| ??? | M | M.HpyC110ORF680P (96% identity) | M.HpyKH27ORFPP | |
| 115 | ATP-dependent DNA helicase | |||