Helicobacter pylori KH26 |
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Putative Helicobacter pylori KH26 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,709,107 bp
GenBank #: PHLZ00000000 (NZ_PHLZ00000000)
REBASE acronym: HpyKH26
Org_num: 31935
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | HpyKH4ORFH1P (93% identity) | HpyKH26ORFA1P | |
| 19 | M | M.HpyLI23XI (95% identity) | M.HpyKH26ORFA1P | |
| 20 | S | S.HpyKH33ORFJP (97% identity) | S.HpyKH26ORFA1P | |
| 42 | 66 aa hypothetical protein 1_17C_ICEHptfs4b_14 | |||
| 43 | M | M.Hpy21FORFDP (92% identity) | M.HpyKH26ORFSP | |
| 44 | S | S.HpyU123XV (93% identity) | S.HpyKH26ORFSP | |
| 45 | R | HpyNAB47ORFFP (94% identity) | HpyKH26ORFSP | |
| 47 | hydroxyethylthiazole kinase | |||
| 151 | LPP20 lipofamily protein | |||
| 152 | S | S.Hpy42KORF7680P (96% identity) | S.HpyKH26ORFJP | |
| 153 | M | M.HpyI029IX (95% identity) | M.HpyKH26ORFJP | |
| 154 | R | HpyKH30ORFKP (96% identity) | HpyKH26ORFJP | |
| 156 | M48 family peptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6 | 62 aa hypothetical protein AEY54_01540 | |||
| ??? | R | HpyKH8ORFVP (100% identity) | ACGT | HpyKH26ORFB1P |
| 10 | M | M.HpyAL9ORF2490P (98% identity) | ACGT | M.HpyKH26ORFB1P |
| 11 | GIY-YIG nuclease family protein | |||
| 10 | DNA cytosine methyltransferase | |||
| 11 | R | GIY-YIG nuclease family protein | HpyKH26ORFC1P | |
| 13 | M | M.HpyKH41ORFA1P (99% identity) | M.HpyKH26ORFC1P | |
| 14 | 108 aa hypothetical protein | |||
| 12 | 119 aa hypothetical protein | |||
| 14 | M | M.HpyBG3X (97% identity) | GATC | M.HpyKH26ORFGP |
| 15 | alpha-1,2-fucosyltransferase | |||
| 17 | modification methylase VspI domain protein | |||
| 18 | M | M.HpyKH36ORFB1P (98% identity) | ATTAAT | M.HpyKH26ORFD1P |
| 15 | DNA topoisomerase subunit B | |||
| 16 | M | M.HpyKH38ORFRP (98% identity) | GTAC | M.HpyKH26ORFEP |
| 17 | R | HpyC006VIP (98% identity) | GTAC | HpyKH26ORFEP |
| 18 | metalloendopeptidase like protein | |||
| ??? | hypothetical protein | |||
| 22 | M | M2.HpyC124XI (94% identity) | GAAGA | M1.HpyKH26ORFWP |
| ??? | M | M1.Hpy19CORFMP (99% identity) | M2.HpyKH26ORFWP | |
| ??? | R | HpyOK304ORFOP (97% identity) | HpyKH26ORFWP | |
| 27 | DNA-binding response regulator | |||
| 28 | 485 aa hypothetical protein | |||
| 29 | RM | HpyKH34ORFUP (83% identity) | HpyKH26ORFYP | |
| 33 | -binding protein | |||
| 22 | Laminin subunit alpha-2 precursor | |||
| ??? | R | HpyKH16ORFDP (99% identity) | TCNNGA | HpyKH26ORFZP |
| 27 | M | M.HpySW04III (99% identity) | TCNNGA | M.HpyKH26ORFZP |
| 28 | 177 aa hypothetical protein HMPREF1397_00627 | |||
| 17 | ATP-dependent helicase | |||
| 19 | M | M.HpyNP10VII (93% identity) | GTNNAC | M.HpyKH26ORFFP |
| 20 | R | HpyNP10VIIP (100% identity) | GTNNAC | HpyKH26ORFFP |
| 21 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 42 | DEAD/DEAH box helicase | |||
| 44 | RM | HpyR03ORF7300P (89% identity) | HpyKH26ORFNP | |
| 46 | DUF4065 domain-containing protein | |||
| 44 | HAD family hydrolase | |||
| 45 | M | M.HpyNP10I (100% identity) | CATG | M.HpyKH26ORFDP |
| 46 | 59 aa hypothetical protein | |||
| 38 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 39 | RM | HpyUM114ORF6530P (68% identity) | HpyKH26ORFTAP | |
| 40 | RM | HpyMA04ORF5690P (28% identity) | HpyKH26ORFTBP | |
| 41 | site-specific DNA-methyltransferase | |||
| 40 | adenine specific DNA methyltransferase | |||
| 41 | M | M.HpyKH41ORFPP (99% identity) | M.HpyKH26ORFUP | |
| ??? | R | HpyNCI57ORFXP (96% identity) | HpyKH26ORFUP | |
| 45 | S41 family peptidase | |||
| 69 | outer membrane protein | |||
| 70 | R | HpyKH35ORFPP (100% identity) | CCATC | HpyKH26ORFLP |
| ??? | M | M2.HpyUM037VI (100% identity) | CCATC | M2.HpyKH26ORFLP |
| 72 | M | M2.HpyNP10III (100% identity) | CCATC | M1.HpyKH26ORFLP |
| 73 | YjgP/YjgQ family permease | |||
| 79 | chaperone protein ClpB | |||
| ??? | M | M.HpyGRE039ORF1515P (99% identity) | M.HpyKH26ORFOP | |
| 85 | R | HpyKH36ORFSP (87% identity) | HpyKH26ORFOP | |
| 86 | 75 aa hypothetical protein HMPREF1407_01483 | |||
| 87 | 69 aa hypothetical protein HMPREF1400_01478 | |||
| ??? | M | DNA -methyltransferase | M.HpyKH26ORFPP | |
| 91 | cysteine-rich protein X | |||
| 94 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 95 | M | M.HpyPE14XVII (96% identity) | GCGC | M.HpyKH26ORFBP |
| 96 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 118 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 119 | M | M1.HpyNP10V (100% identity) | CCTC | M1.HpyKH26ORFQP |
| 121 | M | M.HpyKH36ORFLP (45% identity) | M2.HpyKH26ORFQP | |
| 122 | 325 aa hypothetical protein | |||
| 112 | ComF family protein | |||
| 113 | RM | HpyNP13ORF7140P (98% identity) | HpyKH26ORFKP | |
| 114 | S | S1.HpyKH45ORFSP (97% identity) | S1.HpyKH26ORFKP | |
| 115 | S | S.HpyKH23ORFG1P (62% identity) | S2.HpyKH26ORFKP | |
| 116 | DNA polymerase I | |||
| 121 | DNA cytosine methyltransferase | |||
| 122 | R | HpyKH21ORFMP (100% identity) | HpyKH26ORFRP | |
| 123 | 97 aa hypothetical protein | |||
| 124 | M | M.HpyNP10ORF275P (99% identity) | CCTTC | M.HpyKH26ORFRP |
| 125 | sodium/proline symporter | |||
| 117 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 118 | M | M.Hpybs1ORFFP (86% identity) | M.HpyKH26ORFAP | |
| 119 | Translation elongation factor LepA | |||
| 135 | addiction module antidote protein | |||
| 136 | M | M1.Hpyfe114ORF330P (100% identity) | M1.HpyKH26ORFHP | |
| 137 | M | M2.HpyNCI23ORFWP (99% identity) | M2.HpyKH26ORFHP | |
| 138 | R | HpyGRE040ORF7085P (97% identity) | HpyKH26ORFHP | |
| 139 | cytochrome-c peroxidase | |||
| 179 | 68 aa hypothetical protein | |||
| 180 | M | M.HpyI009VIII (99% identity) | TGCA | M.HpyKH26ORFCP |
| 182 | R | HpyUM037VIIIP (99% identity) | TGCA | HpyKH26ORFCP |
| 183 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | HpySP07ORF6705P (90% identity) | HpyKH26ORFXP | |
| 2 | M | M.HpyKH22ORFYP (95% identity) | M.HpyKH26ORFXP | |
| 3 | 107 aa hypothetical protein | |||
| 17 | rod shape-determining MreC family protein | |||
| 18 | R | HpyLI29XVIIP (95% identity) | HpyKH26ORFVP | |
| ??? | M | M.HpyIN2ORF6710P (98% identity) | M.HpyKH26ORFVP | |
| 22 | DUF1887 family protein | |||
| 38 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyKH44ORFQP (96% identity) | M.HpyKH26ORFMP | |
| 42 | R | HpyP008ORF6860P (94% identity) | HpyKH26ORFMP | |
| 44 | class I SAM-dependent DNA methyltransferase | |||