Helicobacter pylori KH25 |
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Putative Helicobacter pylori KH25 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,625,804 bp
GenBank #: PHMA00000000 (NZ_PHMA00000000)
REBASE acronym: HpyKH25
Org_num: 31934
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 17 | 631 aa hypothetical protein U063_1207 | |||
| 18 | R | HpyIS5ORF4525P (91% identity) | HpyKH25ORFAP | |
| 19 | M | M.HpySP304IV (95% identity) | M.HpyKH25ORFAP | |
| 20 | S | S.HpyIS2ORF2145P (98% identity) | S.HpyKH25ORFAP | |
| 21 | polyphosphate kinase 1 | |||
| 53 | cadmium-translocating P-type ATPase | |||
| 57 | S | S.HpyGRE043XIV (96% identity) | S.HpyKH25ORFQP | |
| 58 | outer membrane beta-barrel protein HofF | |||
| 53 | phosphatase PAP2 family protein | |||
| 54 | M | M.HpyKH1ORFLP (89% identity) | M.HpyKH25ORFTP | |
| 55 | S | S.Hpyfe75ORF3360P (97% identity) | S.HpyKH25ORFTP | |
| ??? | R | HpyKH44ORFNP (95% identity) | HpyKH25ORFTP | |
| 59 | hydroxyethylthiazole kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyGE21III (97% identity) | ATTAAT | M.HpyKH25ORFUP |
| 2 | modification methylase VspI domain protein | |||
| 5 | 104 aa hypothetical protein | |||
| 6 | M | M.HpyPE11VI (99% identity) | ACNGT | M.HpyKH25ORFVP |
| 7 | R | HpyT005IIP (99% identity) | ACNGT | HpyKH25ORFVP |
| 9 | DNA cytosine methyltransferase | |||
| 7 | GIY-YIG nuclease family protein | |||
| 9 | M | M.HpyKH41ORFB1P (99% identity) | ACGT | M.HpyKH25ORFWP |
| 10 | R | HpySP804ORF2530P (99% identity) | ACGT | HpyKH25ORFWP |
| 11 | 84 aa hypothetical protein SE87_02515 | |||
| 8 | ATP-dependent helicase | |||
| 9 | M | M.Hpyfe5ORF2915P (91% identity) | GTNNAC | M.HpyKH25ORFGP |
| 10 | R | HpyK022VIIP (90% identity) | GTNNAC | HpyKH25ORFGP |
| 11 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 21 | DNA topoisomerase subunit B | |||
| 22 | M | M.Hpy13207X (98% identity) | GTAC | M.HpyKH25ORFDP |
| 23 | R | HpyH1ORFIP (96% identity) | GTAC | HpyKH25ORFDP |
| 24 | metalloendopeptidase like protein | |||
| 32 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 33 | M | M.HpyBS272ORF6145P (99% identity) | GCGC | M.HpyKH25ORFFP |
| 34 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 27 | site-specific DNA-methyltransferase | |||
| 29 | M | M1.HpyKH14ORFTP (100% identity) | GAAGA | M1.HpyKH25ORFYP |
| 30 | M | M1.HpyJO3VII (98% identity) | GAAGA | M2.HpyKH25ORFYP |
| 32 | R | HpyPE136VIIP (97% identity) | GAAGA | HpyKH25ORFYP |
| 33 | DNA-binding response regulator | |||
| 52 | DNA polymerase I | |||
| ??? | S | S.HpyPR01ORF6915P (64% identity) | S.HpyKH25ORFPP | |
| 55 | RM | HpyIS5ORF7010P (98% identity) | HpyKH25ORFPP | |
| 56 | ComF family protein | |||
| 39 | Laminin subunit alpha-2 precursor | |||
| 41 | R | HpyFD703ORF335P (98% identity) | TCNNGA | HpyKH25ORFCP |
| 42 | M | M.HpyPE121ORF5195P (99% identity) | TCNNGA | M.HpyKH25ORFCP |
| 43 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 44 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 45 | RM | HpyKH33ORFRP (63% identity) | HpyKH25ORFEP | |
| 62 | HAD family hydrolase | |||
| 63 | M | M.HpyKH19ORFAP (97% identity) | CATG | M.HpyKH25ORFBP |
| 64 | 76 aa hypothetical protein | |||
| 68 | outer membrane protein | |||
| 69 | RM | HpySP324ORF3250P (41% identity) | HpyKH25ORFSBP | |
| 71 | RM | HpyKH38ORFFP (58% identity) | HpyKH25ORFSAP | |
| 73 | -binding protein | |||
| 95 | YjgP/YjgQ family permease | |||
| 96 | M | M2.HpyKH37ORFHP (98% identity) | CCATC | M1.HpyKH25ORFOP |
| 97 | M | M2.HpySW04VII (93% identity) | CCATC | M2.HpyKH25ORFOP |
| 98 | R | HpyKG6VP (89% identity) | CCATC | HpyKH25ORFOP |
| 99 | outer membrane protein | |||
| 118 | 81 aa hypothetical protein N207_00430 | |||
| 119 | RM | 150 aa hypothetical protein | HpyKH25ORFMBP | |
| 120 | RM | HpyL009ORF7305P (76% identity) | HpyKH25ORFMAP | |
| 122 | 968 aa hypothetical protein | |||
| 165 | S41 family peptidase | |||
| 166 | R | HpySP201ORF470P (80% identity) | HpyKH25ORFRP | |
| ??? | M | M.HpyU404VI (99% identity) | M.HpyKH25ORFRP | |
| 170 | DNA methyltransferase | |||
| 146 | restriction endonuclease subunit S | |||
| 147 | M | M.HpySWT08II (64% identity) | M.HpyKH25ORFLP | |
| 148 | 68 aa hypothetical protein | |||
| 265 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 266 | M | M1.HpySP510VII (99% identity) | CCTC | M1.HpyKH25ORFKP |
| 268 | M | M2.HpyKH34ORFQP (98% identity) | CCTC | M2.HpyKH25ORFKP |
| 270 | R | HpyL026VP (73% identity) | CCTC | HpyKH25ORFKP |
| 271 | sodium/proline symporter | |||
| 265 | chaperone protein ClpB | |||
| 268 | M | M.HpyI029VII (100% identity) | CCGG | M.HpyKH25ORFHP |
| 269 | R | HpyU414IVP (92% identity) | CCGG | HpyKH25ORFHP |
| 270 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 270 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 271 | M | M.HpyKH23ORFKP (99% identity) | TCGA | M.HpyKH25ORFIP |
| 272 | exodeoxyribonuclease VII large subunit | |||
| 330 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| ??? | R | Hpy1681ORFTP (82% identity) | GATC | HpyKH25ORFJP |
| 334 | M | M.Hpy99517ORFAP (96% identity) | GATC | M.HpyKH25ORFJP |
| 335 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3 | biotin synthase | |||
| 5 | R | HpyPE124ORF6310P (87% identity) | HpyKH25ORFZP | |
| 6 | M | M.Hpy24AORFJP (94% identity) | M.HpyKH25ORFZP | |
| 7 | DNA/RNA non-specific endonuclease | |||
| 23 | 67 aa hypothetical protein | |||
| ??? | R | HpyF014ORF6830P (92% identity) | HpyKH25ORFXP | |
| 27 | M | M.HpyL002ORF395P (92% identity) | M.HpyKH25ORFXP | |
| 29 | DUF1887 family protein | |||
| 120 | class I SAM-dependent DNA methyltransferase | |||
| 122 | R | HpyT023ORF7425P (95% identity) | HpyKH25ORFNP | |
| ??? | M | M.HpySP315ORF6995P (97% identity) | M.HpyKH25ORFNP | |
| 128 | ATP-dependent DNA helicase | |||