Helicobacter pylori KH21 |
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Putative Helicobacter pylori KH21 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,647,771 bp
GenBank #: PHMD00000000 (NZ_PHMD00000000)
REBASE acronym: HpyKH21
Org_num: 31853
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 61 | phosphatase PAP2 family protein | |||
| 62 | M | M.HpyKH20ORFDP (100% identity) | M.HpyKH21ORFRP | |
| 63 | S | S.HpyKH20ORFDP (100% identity) | S.HpyKH21ORFRP | |
| ??? | R | HpyKH20ORFDP (99% identity) | HpyKH21ORFRP | |
| 67 | hydroxyethylthiazole kinase | |||
| 105 | M48 family peptidase | |||
| 108 | R | DUF1738 domain-containing protein | HpyKH21ORFQP | |
| 109 | M | type I restriction-modification system, M subunit | M.HpyKH21ORFQP | |
| ??? | S | S.HpyKH20ORFKP (56% identity) | S.HpyKH21ORFQP | |
| 159 | polyphosphate kinase 1 | |||
| 160 | S | S.HpyKH20ORFCP (100% identity) | S.HpyKH21ORFIP | |
| 161 | M | M.HpyKH20ORFCP (99% identity) | M.HpyKH21ORFIP | |
| ??? | R | HpyKH20ORFCP (98% identity) | HpyKH21ORFIP | |
| 165 | 631 aa hypothetical protein U063_1207 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | alpha-1,2-fucosyltransferase | |||
| 3 | M | M.HpyKH40ORFJP (97% identity) | GATC | M.HpyKH21ORFAP |
| 4 | 126 aa hypothetical protein | |||
| 1 | M | M.HpyKH9ORFC1P (98% identity) | ATTAAT | M.HpyKH21ORFXP |
| 2 | modification methylase VspI domain protein | |||
| 5 | 108 aa hypothetical protein | |||
| 6 | M | DNA adenine methylase | M.HpyKH21ORFYP | |
| 7 | R | HpyKH20ORFYP (99% identity) | HpyKH21ORFYP | |
| 9 | DNA cytosine methyltransferase | |||
| 7 | GIY-YIG nuclease family protein | |||
| ??? | M | M.HpyKH20ORFXP (100% identity) | M.HpyKH21ORFZP | |
| ??? | R | HpyKH20ORFXP (100% identity) | HpyKH21ORFZP | |
| 16 | 101 aa hypothetical protein SE87_02515 | |||
| 12 | S41 family peptidase | |||
| ??? | R | HpyKH20ORFPP (100% identity) | HpyKH21ORFA1P | |
| 16 | M | M.HpyKH20ORFPP (100% identity) | M.HpyKH21ORFA1P | |
| 17 | DNA methyltransferase | |||
| 18 | 177 aa hypothetical protein HMPREF1397_00627 | |||
| ??? | M | M.HpyKH20ORFWP (99% identity) | TCNNGA | M.HpyKH21ORFWP |
| 21 | R | HpyKH20ORFWP (100% identity) | TCNNGA | HpyKH21ORFWP |
| 22 | Laminin subunit alpha-2 precursor | |||
| 16 | DNA topoisomerase subunit B | |||
| 18 | M | M.HpyKH20ORFFP (100% identity) | M.HpyKH21ORFGP | |
| 19 | R | HpyKH20ORFFP (100% identity) | HpyKH21ORFGP | |
| 21 | metalloendopeptidase like protein | |||
| 23 | -binding protein | |||
| ??? | RM | HpyKH20ORFNBP (75% identity) | HpyKH21ORFSP | |
| 29 | 59 aa hypothetical protein | |||
| 16 | ATP-dependent helicase | |||
| 17 | M | M.HpyUM037V (92% identity) | GTNNAC | M.HpyKH21ORFTP |
| 18 | R | 130 aa hypothetical protein | GTNNAC | HpyKH21ORFTP |
| 19 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 43 | 969 aa hypothetical protein | |||
| ??? | RM | HpyKH20ORFQP (99% identity) | HpyKH21ORFLP | |
| 49 | DUF4065 domain-containing protein | |||
| 44 | Translation elongation factor LepA | |||
| 45 | M | M.HpyKH20ORFBP (100% identity) | M.HpyKH21ORFCP | |
| 46 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 41 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyGE2ORF2380P (86% identity) | HpyKH21ORFHP | |
| 58 | HAD family hydrolase | |||
| 59 | M | M.HpyNP10I (99% identity) | CATG | M.HpyKH21ORFBP |
| 60 | 59 aa hypothetical protein | |||
| 62 | sodium/proline symporter | |||
| 63 | M | M.HpyUM037ORF8285P (99% identity) | CCTTC | M.HpyKH21ORFMP |
| 64 | 97 aa hypothetical protein | |||
| 65 | R | HpyKH26ORFRP (100% identity) | HpyKH21ORFMP | |
| 66 | DNA cytosine methyltransferase | |||
| 65 | 325 aa hypothetical protein | |||
| 66 | M | M2.HpyKH20ORFMP (100% identity) | M2.HpyKH21ORFNP | |
| 67 | M | M1.HpyKH20ORFMP (100% identity) | CCTC | M1.HpyKH21ORFNP |
| 69 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 71 | outer membrane protein | |||
| 72 | R | HpyKH20ORFIP (100% identity) | HpyKH21ORFEP | |
| 73 | DNA -methyltransferase | |||
| 72 | AlwI family type II restriction endonuclease | |||
| 73 | M | M.HpyKH20ORFHP (99% identity) | M.HpyKH21ORFFP | |
| 74 | YjgP/YjgQ family permease | |||
| 82 | chaperone protein ClpB | |||
| 86 | M | M.HpyBGR10IV (98% identity) | CCGG | M.HpyKH21ORFOP |
| 87 | R | HpyKH20ORFUP (100% identity) | CCGG | HpyKH21ORFOP |
| 88 | 75 aa hypothetical protein HMPREF1407_01483 | |||
| 89 | 69 aa hypothetical protein HMPREF1400_01478 | |||
| ??? | M | DNA -methyltransferase | M.HpyKH21ORFPP | |
| 93 | cysteine-rich protein X | |||
| 96 | 154 aa hypothetical protein HMPREF1427_00277 | |||
| 97 | M | M.HpyKH20ORFEP (100% identity) | GCGC | M.HpyKH21ORFDP |
| 98 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 114 | ComF family protein | |||
| 116 | RM | HpyKH20ORFOP (100% identity) | HpyKH21ORFJP | |
| 117 | S | S.HpySWT13ORF6805P (96% identity) | S.HpyKH21ORFJP | |
| 118 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2 | biotin synthase | |||
| 4 | R | HpyKH20ORFTP (98% identity) | HpyKH21ORFVP | |
| 5 | M | M.HpyKH20ORFTP (99% identity) | M.HpyKH21ORFVP | |
| 6 | DNA/RNA non-specific endonuclease | |||
| 23 | rod shape-determining MreC family protein | |||
| ??? | R | HpyKH20ORFSP (99% identity) | HpyKH21ORFUP | |
| 27 | M | M.HpyKH20ORFSP (93% identity) | M.HpyKH21ORFUP | |
| 30 | DNA-binding response regulator | |||
| 39 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyKH20ORFRP (99% identity) | M.HpyKH21ORFKP | |
| 43 | R | HpyKH20ORFRP (99% identity) | HpyKH21ORFKP | |
| 46 | class I SAM-dependent DNA methyltransferase | |||