Helicobacter pylori KH20 |
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Putative Helicobacter pylori KH20 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,647,657 bp
GenBank #: PHME00000000 (NZ_PHME00000000)
REBASE acronym: HpyKH20
Org_num: 31852
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 34 | hydroxyethylthiazole kinase | |||
| 35 | R | HpyLI01ORF2530P (95% identity) | HpyKH20ORFDP | |
| 38 | S | S.HpyKH21ORFRP (100% identity) | S.HpyKH20ORFDP | |
| 39 | M | M.HpyKH21ORFRP (100% identity) | M.HpyKH20ORFDP | |
| 40 | phosphatase PAP2 family protein | |||
| 65 | M48 family peptidase | |||
| 68 | R | DUF1738 domain-containing protein | HpyKH20ORFKP | |
| ??? | M | hypothetical protein | M.HpyKH20ORFKP | |
| 71 | S | S.HpyBG5IV (98% identity) | S.HpyKH20ORFKP | |
| 72 | LPP20 lipofamily protein | |||
| 160 | polyphosphate kinase 1 | |||
| 161 | S | S.HpyKH21ORFIP (100% identity) | S.HpyKH20ORFCP | |
| 162 | M | M.HpyKH21ORFIP (99% identity) | M.HpyKH20ORFCP | |
| 163 | R | HpyKH21ORFIP (98% identity) | HpyKH20ORFCP | |
| 164 | 631 aa hypothetical protein U063_1207 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | DNA topoisomerase subunit B | |||
| 2 | M | M.HpyKH21ORFGP (100% identity) | M.HpyKH20ORFFP | |
| 3 | R | HpyKH21ORFGP (100% identity) | HpyKH20ORFFP | |
| 5 | metalloendopeptidase like protein | |||
| 4 | 101 aa hypothetical protein SE87_02515 | |||
| ??? | R | HpyKH21ORFZP (100% identity) | HpyKH20ORFXP | |
| ??? | M | M.HpyKH21ORFZP (100% identity) | M.HpyKH20ORFXP | |
| 12 | GIY-YIG nuclease family protein | |||
| ??? | hypothetical protein | |||
| 12 | R | HpyKH21ORFYP (99% identity) | HpyKH20ORFYP | |
| 14 | M | DNA adenine methylase | M.HpyKH20ORFYP | |
| 15 | 108 aa hypothetical protein | |||
| 12 | S41 family peptidase | |||
| ??? | R | HpyKH21ORFA1P (100% identity) | HpyKH20ORFPP | |
| 16 | M | M.HpyKH21ORFA1P (100% identity) | M.HpyKH20ORFPP | |
| 17 | DNA methyltransferase | |||
| 18 | modification methylase VspI domain protein | |||
| 19 | M | M.HpyUM037VII (99% identity) | ATTAAT | M.HpyKH20ORFZP |
| 22 | Laminin subunit alpha-2 precursor | |||
| 25 | R | HpyKH21ORFWP (100% identity) | TCNNGA | HpyKH20ORFWP |
| ??? | M | M.HpyKH21ORFWP (99% identity) | M.HpyKH20ORFWP | |
| 28 | 177 aa hypothetical protein HMPREF1397_00627 | |||
| 17 | ATP-dependent helicase | |||
| 18 | M | M.HpyBS31ORF5195P (91% identity) | GTNNAC | M.HpyKH20ORFJP |
| 19 | R | HpyUM037VP (93% identity) | GTNNAC | HpyKH20ORFJP |
| 20 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 42 | Translation elongation factor LepA | |||
| 43 | M | M.HpyKH21ORFCP (100% identity) | M.HpyKH20ORFBP | |
| 44 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 54 | ulcer-associated gene restriction endonuclease | |||
| 55 | M | M.HpyKH33ORFDP (100% identity) | CATG | M.HpyKH20ORFAP |
| 56 | HAD family hydrolase | |||
| 45 | sodium/proline symporter | |||
| 46 | M | M.HpyUM037ORF8285P (100% identity) | CCTTC | M.HpyKH20ORFLP |
| 47 | 97 aa hypothetical protein | |||
| 48 | R | HpyKH26ORFRP (100% identity) | HpyKH20ORFLP | |
| 49 | DNA cytosine methyltransferase | |||
| 48 | 325 aa hypothetical protein | |||
| 49 | M | M2.HpyKH21ORFNP (100% identity) | M2.HpyKH20ORFMP | |
| 50 | M | M1.HpyKH21ORFNP (100% identity) | CCTC | M1.HpyKH20ORFMP |
| 52 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 53 | alpha-1,2-fucosyltransferase | |||
| 54 | M | M.HpyBR6IX (97% identity) | GATC | M.HpyKH20ORFGP |
| 55 | 126 aa hypothetical protein | |||
| 77 | chaperone protein ClpB | |||
| 81 | M | M.HpyT001ORF1285P (98% identity) | CCGG | M.HpyKH20ORFUP |
| 82 | R | HpyKH21ORFOP (100% identity) | CCGG | HpyKH20ORFUP |
| 83 | 75 aa hypothetical protein HMPREF1407_01483 | |||
| 84 | 69 aa hypothetical protein HMPREF1400_01478 | |||
| ??? | M | DNA -methyltransferase | M.HpyKH20ORFVP | |
| 88 | cysteine-rich protein X | |||
| 102 | DNA polymerase I | |||
| 103 | S | S.HpyL020ORF7305P (61% identity) | S.HpyKH20ORFOP | |
| 104 | RM | HpyKH21ORFJP (100% identity) | HpyKH20ORFOP | |
| 105 | ComF family protein | |||
| 91 | 154 aa hypothetical protein HMPREF1427_00277 | |||
| 92 | M | M.HpyKH21ORFDP (100% identity) | GCGC | M.HpyKH20ORFEP |
| 93 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 146 | YjgP/YjgQ family permease | |||
| 147 | M | M.HpyKH21ORFFP (99% identity) | M.HpyKH20ORFHP | |
| 148 | AlwI family type II restriction endonuclease | |||
| 147 | DNA -methyltransferase | |||
| 148 | R | HpyKH21ORFEP (100% identity) | HpyKH20ORFIP | |
| 149 | outer membrane protein | |||
| 128 | -binding protein | |||
| 129 | RM | DEAD/DEAH box helicase | HpyKH20ORFNAP | |
| 130 | RM | HpyKH21ORFSP (75% identity) | HpyKH20ORFNBP | |
| 134 | 59 aa hypothetical protein | |||
| 170 | DUF4065 domain-containing protein | |||
| 171 | RM | HpyKH21ORFLP (99% identity) | HpyKH20ORFQP | |
| 173 | 969 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 31 | DNA-binding response regulator | |||
| 32 | M | M.HpyL032ORF6620P (94% identity) | M.HpyKH20ORFSP | |
| 35 | R | HpyKH21ORFUP (99% identity) | HpyKH20ORFSP | |
| 37 | rod shape-determining MreC family protein | |||
| 54 | DNA/RNA non-specific endonuclease | |||
| 55 | M | M.HpyKH21ORFVP (99% identity) | M.HpyKH20ORFTP | |
| 56 | R | HpyKH21ORFVP (98% identity) | HpyKH20ORFTP | |
| 57 | biotin synthase | |||
| 171 | class I SAM-dependent DNA methyltransferase | |||
| 173 | R | HpyKH21ORFKP (99% identity) | HpyKH20ORFRP | |
| 176 | M | M.HpyKH21ORFKP (99% identity) | M.HpyKH20ORFRP | |
| 177 | ATP-dependent DNA helicase | |||