Helicobacter pylori KH18 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori KH18 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,648,469 bp
GenBank #: PHMG00000000 (NZ_PHMG00000000)
REBASE acronym: HpyKH18
Org_num: 31850
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyPE20ORF4340P (18% identity) | S.HpyKH18ORFA1P | |
| 2 | R | HpyT006ORF4025P (95% identity) | HpyKH18ORFA1P | |
| 5 | hydroxyethylthiazole kinase | |||
| 1 | S | S.HpyF004ORF2125P (98% identity) | S.HpyKH18ORFJP | |
| 2 | M | M.Hpy5005ORF1780P (96% identity) | M.HpyKH18ORFJP | |
| 3 | R | Hpy5005ORF1780P (74% identity) | HpyKH18ORFJP | |
| 1 | 82 aa hypothetical protein HPHPA8_1449 | |||
| 3 | S | S.HpyR10XIII (95% identity) | S.HpyKH18ORFG1P | |
| 2 | uncharacterized protein HPF18_0814 | |||
| ??? | M | M.HpyKH34ORFVP (92% identity) | M.HpyKH18ORFTP | |
| 6 | 126 aa hypothetical protein | |||
| 10 | HsdR family type I site-specific deoxyribonuclease | |||
| 11 | M | M.HpyI022VIII (95% identity) | M.HpyKH18ORFF1P | |
| 48 | outer membrane beta-barrel protein HofF | |||
| 50 | S | S.HpyTW23ORF3835P (70% identity) | S.HpyKH18ORFZP | |
| 242 | M48 family peptidase | |||
| 244 | R | HpyC117ORF7615P (84% identity) | HpyKH18ORFOP | |
| 245 | integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | alpha-1,2-fucosyltransferase | |||
| 3 | M | M.HpyB140ORF7140P (97% identity) | GATC | M.HpyKH18ORFDP |
| 5 | 336 aa hypothetical protein | |||
| 1 | M | M.HpyL007V (97% identity) | ATTAAT | M.HpyKH18ORFC1P |
| 2 | modification methylase VspI domain protein | |||
| 5 | 108 aa hypothetical protein | |||
| 6 | M | M.HpyKH7ORFA1P (97% identity) | ACNGT | M.HpyKH18ORFD1P |
| 7 | R | type II restriction endonuclease | ACNGT | HpyKH18ORFD1P |
| 9 | DNA cytosine methyltransferase | |||
| 7 | type II restriction endonuclease | |||
| 9 | M | M.HpyPO03ORF2220P (96% identity) | ACGT | M.HpyKH18ORFE1P |
| 10 | catalase family peroxidase | |||
| 13 | S41 family peptidase | |||
| 14 | R | HpyKH1ORFVP (97% identity) | GANTC | HpyKH18ORFVP |
| 15 | M | M.HpyKH33ORFSP (98% identity) | GANTC | M.HpyKH18ORFVP |
| 16 | DNA methyltransferase | |||
| 17 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 18 | R | HpyU421XP (94% identity) | HpyKH18ORFIP | |
| 19 | M | M.HpyMM01XIII (90% identity) | M.HpyKH18ORFIP | |
| 20 | ATP-dependent helicase | |||
| 16 | DNA methyltransferase | |||
| 17 | RM | HpyNCI2aORFYP (80% identity) | HpyKH18ORFWP | |
| 18 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 15 | DNA topoisomerase subunit B | |||
| 17 | M | M.HpyNCI57IX (95% identity) | GTAC | M.HpyKH18ORFGP |
| 18 | R | HpyKH23ORFRP (97% identity) | GTAC | HpyKH18ORFGP |
| 19 | metalloendopeptidase like protein | |||
| 20 | 969 aa hypothetical protein | |||
| 23 | RM | class I SAM-dependent DNA methyltransferase | HpyKH18ORFSAP | |
| 25 | RM | HpyP108ORF6825P (40% identity) | HpyKH18ORFSBP | |
| 26 | DUF4065 domain-containing protein | |||
| 23 | -binding protein | |||
| ??? | RM | HpyKH1ORFGP (88% identity) | HpyKH18ORFPP | |
| 26 | 79 aa hypothetical protein | |||
| 21 | Laminin subunit alpha-2 precursor | |||
| 23 | R | HpyMM04XIIP (98% identity) | HpyKH18ORFB1P | |
| ??? | M | M.HpyU115ORF1225P (98% identity) | M.HpyKH18ORFB1P | |
| 34 | exodeoxyribonuclease VII large subunit | |||
| 35 | M | M.Hpy5004ORF6605P (96% identity) | TCGA | M.HpyKH18ORFKP |
| 37 | type II R-M system restriction endonuclease | |||
| 35 | DNA -methyltransferase | |||
| 37 | R | Hpy14039ORFJP (71% identity) | HpyKH18ORFLP | |
| 38 | M | M.HpyZ008ORF1280P (86% identity) | M.HpyKH18ORFLP | |
| 39 | chaperone protein ClpB | |||
| 54 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 55 | M | M.HpyKH21ORFDP (99% identity) | GCGC | M.HpyKH18ORFHP |
| 56 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 69 | sodium/proline symporter | |||
| 70 | R | HpyNCI49XIIP (91% identity) | CCTC | HpyKH18ORFMP |
| 71 | M | M2.HpyKH1ORFRP (99% identity) | CCTC | M2.HpyKH18ORFMP |
| 72 | M | M1.HpyI015VI (99% identity) | CCTC | M1.HpyKH18ORFMP |
| 74 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 88 | ComF family protein | |||
| 89 | RM | HpyKH28ORFRP (99% identity) | HpyKH18ORFUP | |
| ??? | S | S.HpyC006XVI (95% identity) | S.HpyKH18ORFUP | |
| 92 | DNA polymerase I | |||
| 111 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 112 | R | HpyKH10ORFBP (97% identity) | CTNAG | HpyKH18ORFAP |
| 113 | M | M.HpyBG7V (99% identity) | CTNAG | M.HpyKH18ORFAP |
| 114 | 122 aa hypothetical protein | |||
| 207 | ulcer-associated gene restriction endonuclease | |||
| 208 | M | M.HpyKH30ORFBP (98% identity) | CATG | M.HpyKH18ORFBP |
| 209 | HAD family hydrolase | |||
| 187 | penicillin-binding protein 2 | |||
| 188 | M | M.HpyKH9ORFHP (99% identity) | M.HpyKH18ORFEP | |
| 189 | 366 aa hypothetical protein | |||
| 219 | cytochrome c1 | |||
| 220 | R | HpyKH23ORFMP (99% identity) | TGCA | HpyKH18ORFFP |
| 221 | M | M.HpyKH23ORFMP (99% identity) | TGCA | M.HpyKH18ORFFP |
| 222 | 68 aa hypothetical protein | |||
| 261 | phosphopentomutase | |||
| 262 | R | HpyKH23ORFCP (99% identity) | TCNGA | HpyKH18ORFCP |
| 264 | M | M.Hpy173AORFEP (99% identity) | TCNGA | M.HpyKH18ORFCP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyBG7ORF7535P (97% identity) | M.HpyKH18ORFQP | |
| 20 | 969 aa hypothetical protein | |||
| ??? | hypothetical protein | |||
| 20 | R | HpyKH19ORFPP (99% identity) | HpyKH18ORFRP | |
| 23 | class I SAM-dependent DNA methyltransferase | |||
| 29 | DNA-binding response regulator | |||
| ??? | M | M.Hpyfe124ORF6905P (90% identity) | M.HpyKH18ORFXP | |
| 33 | R | HpyKH3ORFZP (91% identity) | HpyKH18ORFXP | |
| 35 | rod shape-determining MreC family protein | |||
| 53 | 117 aa hypothetical protein | |||
| 54 | M | M.HpySP203ORF6610P (96% identity) | M.HpyKH18ORFYP | |
| 56 | R | HpyKG9ORF6720P (89% identity) | HpyKH18ORFYP | |