Helicobacter pylori KH17 |
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Putative Helicobacter pylori KH17 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,625,170 bp
GenBank #: PHMH00000000 (NZ_PHMH00000000)
REBASE acronym: HpyKH17
Org_num: 31849
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | HpyIN7ORF2325P (78% identity) | HpyKH17ORFCP | |
| 2 | M | M.HpyIN7ORF2325P (100% identity) | M.HpyKH17ORFCP | |
| 3 | S | S.HpyIN7ORF2325P (92% identity) | S.HpyKH17ORFCP | |
| 4 | polyphosphate kinase 1 | |||
| 1 | M | M.HpyIN7ORF4240P (100% identity) | M.HpyKH17ORFSP | |
| 2 | DNA cytosine methyltransferase | |||
| 31 | hydroxyethylthiazole kinase | |||
| 32 | R | HpyIN7ORF4240P (100% identity) | HpyKH17ORFD1P | |
| 35 | restriction endonuclease subunit S | |||
| 46 | cadmium-translocating P-type ATPase | |||
| ??? | S | S.HpyIN7ORF3930P (61% identity) | S.HpyKH17ORFE1P | |
| 309 | M48 family peptidase | |||
| 312 | R | HpyIN7ORF7430P (99% identity) | HpyKH17ORFUP | |
| ??? | M | M.HpyIN7ORF7430P (100% identity) | M.HpyKH17ORFUP | |
| 316 | 258 aa unknown | |||
| 317 | S | S.HpyIN7ORF7430P (100% identity) | S2.HpyKH17ORFUP | |
| 318 | 59 aa hypothetical protein HPHPP2_1724 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | HpyIN7ORF6600P (69% identity) | HpyKH17ORFHP | |
| 4 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 1 | adenine specific DNA methyltransferase | |||
| 2 | M | M.HpyIN7VIII (100% identity) | GANTC | M.HpyKH17ORFKP |
| 3 | R | HpyIN7VIIIP (100% identity) | GANTC | HpyKH17ORFKP |
| 4 | S41 family peptidase | |||
| 1 | M | M.HpyIN7VI (100% identity) | CGWCG | M.HpyKH17ORFGP |
| 2 | R | HpyKH9ORFJP (99% identity) | CGWCG | HpyKH17ORFGP |
| 4 | 130 aa hypothetical protein HMPREF1421_01304 | |||
| 1 | type I restriction-modification system subunit M | |||
| 2 | M | M.HpyIN7ORF4245P (100% identity) | M.HpyKH17ORFTP | |
| 3 | R | HpyIN7ORF4245P (100% identity) | HpyKH17ORFTP | |
| 4 | 68 aa hypothetical protein HPHPM6_1194 | |||
| 6 | 66 aa hypothetical protein SE87_02515 | |||
| 7 | R | HpyIN7ORF2430P (100% identity) | ACGT | HpyKH17ORFF1P |
| 8 | M | M.HpyIN7ORF2430P (100% identity) | ACGT | M.HpyKH17ORFF1P |
| 9 | GIY-YIG nuclease family protein | |||
| 8 | DNA cytosine methyltransferase | |||
| 9 | R | HpyIN7IIP (100% identity) | ACNGT | HpyKH17ORFG1P |
| 11 | M | M.HpyIN7II (100% identity) | ACNGT | M.HpyKH17ORFG1P |
| 12 | translational GTPase TypA | |||
| 8 | ATP-dependent helicase | |||
| 9 | M | M.HpyIN7ORF4535P (93% identity) | GTNNAC | M.HpyKH17ORFJP |
| 10 | R | HpyIN7ORF4535P (100% identity) | GTNNAC | HpyKH17ORFJP |
| 11 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 14 | modification methylase VspI domain protein | |||
| 15 | M | M.HpyIN7III (100% identity) | ATTAAT | M.HpyKH17ORFH1P |
| 16 | outer membrane beta-barrel protein | |||
| 17 | DNA topoisomerase subunit B | |||
| 19 | M | M.HpyFD423ORFTP (97% identity) | M.HpyKH17ORFFP | |
| 20 | R | HpyKH22ORFDP (96% identity) | HpyKH17ORFFP | |
| 21 | metalloendopeptidase like protein | |||
| 14 | alpha-1,2-fucosyltransferase | |||
| 16 | M | M.HpyIN7ORF635P (100% identity) | M.HpyKH17ORFIP | |
| 17 | R | HpyFD430ORFA1P (59% identity) | HpyKH17ORFIP | |
| 18 | integrase/recombinase XerCD family | |||
| 15 | DNA-binding response regulator | |||
| ??? | R | HpyIN7ORF6670P (100% identity) | HpyKH17ORFVP | |
| ??? | M | M1.HpyIN7ORF6670P (95% identity) | M1.HpyKH17ORFVP | |
| ??? | M | M2.HpyIN7ORF6670P (95% identity) | M2.HpyKH17ORFVP | |
| 27 | site-specific DNA-methyltransferase | |||
| 36 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 37 | M | M.HpyIN7XIII (98% identity) | M.HpyKH17ORFAP | |
| 38 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 41 | HAD family hydrolase | |||
| 42 | M | M.HpyIN7I (100% identity) | M.HpyKH17ORFRP | |
| ??? | R | HpyIN7IP (100% identity) | HpyKH17ORFRP | |
| 48 | serine acetyltransferase | |||
| 37 | pseudaminic acid synthase | |||
| 38 | R | R2.HpyKH7ORFYP (100% identity) | R2.HpyKH17ORFLP | |
| 39 | R | R1.HpyIN7ORF1035P (100% identity) | R1.HpyKH17ORFLP | |
| 40 | DNA cytosine methyltransferase | |||
| 41 | M | M.HpyKH7ORFYP (100% identity) | M.HpyKH17ORFLP | |
| 42 | 68 aa hypothetical protein | |||
| 82 | Laminin subunit alpha-2 precursor | |||
| 84 | R | HpyIN7XIIP (100% identity) | TCNNGA | HpyKH17ORFBP |
| 85 | M | M.HpyIN7XII (100% identity) | TCNNGA | M.HpyKH17ORFBP |
| 86 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 118 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 119 | M | M.HpyIN7ORF1890P (100% identity) | M.HpyKH17ORFDP | |
| 120 | Translation elongation factor LepA | |||
| 128 | DNA cytosine methyltransferase | |||
| 129 | R | HpyKH39ORFPP (99% identity) | GTSAC | HpyKH17ORFNP |
| 130 | M | M.HpyKH39ORFPP (100% identity) | GTSAC | M.HpyKH17ORFNP |
| 131 | restriction endonuclease | |||
| 130 | site-specific DNA-methyltransferase | |||
| 131 | R | HpyIN7VP (97% identity) | CCTC | HpyKH17ORFOP |
| 132 | M | M2.HpyIN7VP (100% identity) | CCTC | M2.HpyKH17ORFOP |
| 133 | M | M1.HpyIN7V (100% identity) | CCTC | M1.HpyKH17ORFOP |
| 135 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 129 | -binding protein | |||
| ??? | RM | HpyIN7ORF3345P (100% identity) | HpyKH17ORFMP | |
| 140 | 116 aa hypothetical protein | |||
| 163 | uncharacterized protein | |||
| 164 | M | M.HpySG13VI (100% identity) | CTNAG | M.HpyKH17ORFEP |
| 167 | R | HpyIN7VIIP (94% identity) | CTNAG | HpyKH17ORFEP |
| 168 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 238 | chaperone protein ClpB | |||
| 241 | M | M.HpyIN7IV (100% identity) | CCGG | M.HpyKH17ORFPP |
| 242 | R | HpyIN7IVP (93% identity) | CCGG | HpyKH17ORFPP |
| 243 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 243 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 244 | M | M.HpyIN7XI (98% identity) | TCGA | M.HpyKH17ORFQP |
| 245 | exodeoxyribonuclease VII large subunit | |||
| 339 | 969 aa hypothetical protein | |||
| 342 | RM | HpyIN7XIV (100% identity) | HpyKH17ORFYP | |
| 343 | 270 aa hypothetical protein HMPREF1411_00815 | |||
| 369 | outer membrane protein | |||
| ??? | R | HpyP003ORF6840P (93% identity) | HpyKH17ORFA1P | |
| 375 | DNA -methyltransferase | |||
| ??? | hypothetical protein | |||
| 375 | M | M.Hpyfe59ORF135P (99% identity) | M.HpyKH17ORFB1P | |
| 376 | YjgP/YjgQ family permease | |||
| 416 | ComF family protein | |||
| 418 | RM | HpyIN7ORF7105P (100% identity) | HpyKH17ORFC1P | |
| 419 | S | S.HpyIN7ORF7105P (100% identity) | S.HpyKH17ORFC1P | |
| 420 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | hypothetical protein | |||
| ??? | M | M.HpyIN7ORF6680P (97% identity) | M.HpyKH17ORFWP | |
| 29 | R | HpyIN7ORF6680P (100% identity) | HpyKH17ORFWP | |
| 31 | 67 aa hypothetical protein | |||
| 47 | DNA/RNA non-specific endonuclease | |||
| 48 | M | M.HpyIN7ORF6745P (100% identity) | M.HpyKH17ORFZP | |
| 49 | R | HpyIN7ORF6745P (98% identity) | HpyKH17ORFZP | |
| 50 | biotin synthase | |||
| 334 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyIN7ORF7360P (100% identity) | M.HpyKH17ORFXP | |
| 339 | R | HpyIN7ORF7360P (100% identity) | HpyKH17ORFXP | |
| 342 | class I SAM-dependent DNA methyltransferase | |||