Helicobacter pylori KH16 |
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Putative Helicobacter pylori KH16 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,598,738 bp
GenBank #: PHMI00000000 (NZ_PHMI00000000)
REBASE acronym: HpyKH16
Org_num: 31848
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 33 | DNA cytosine methyltransferase | |||
| ??? | M | M.HpyBG8ORF2405P (95% identity) | M.HpyKH16ORFMP | |
| 36 | S | S.HpyQ514ORFB1P (95% identity) | S.HpyKH16ORFMP | |
| 37 | R | HpyFD703ORF5075P (96% identity) | HpyKH16ORFMP | |
| 40 | hydroxyethylthiazole kinase | |||
| 50 | formyltetrahydrofolate deformylase | |||
| 51 | S | S.HpySP707ORF7755P (91% identity) | S.HpyKH16ORFWP | |
| 52 | 89 aa hypothetical protein BB399_03830 | |||
| 99 | 60 aa hypothetical protein | |||
| 100 | S | S.HpyP109ORF2285P (99% identity) | S.HpyKH16ORFSP | |
| 101 | M | M.HpyC207ORF2175P (95% identity) | M.HpyKH16ORFSP | |
| ??? | R | HpyBG9ORF4335P (88% identity) | HpyKH16ORFSP | |
| 105 | 631 aa hypothetical protein U063_1207 | |||
| 255 | M48 family peptidase | |||
| 258 | R | HpyGE10ORF7410P (93% identity) | HpyKH16ORFBP | |
| 260 | M | M.HpySP606ORF7620P (93% identity) | M.HpyKH16ORFBP | |
| 261 | S | S.HpyG001X (87% identity) | S.HpyKH16ORFBP | |
| 262 | LPP20 lipofamily protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Hpy655ORF6645P (100% identity) | M.HpyKH16ORFB1P | |
| 2 | HNH endonuclease | |||
| 1 | RM | HpyR11ORF6705P (89% identity) | HpyKH16ORFGP | |
| 2 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 1 | site-specific DNA-methyltransferase | |||
| 2 | M | M2.HpyKH3ORFYP (100% identity) | GAAGA | M1.HpyKH16ORFD1P |
| 3 | M | M2.HpyCRI3VII (98% identity) | GAAGA | M2.HpyKH16ORFD1P |
| 4 | R | HpyKH22ORFXP (86% identity) | GAAGA | HpyKH16ORFD1P |
| 1 | RM | adenine specific DNA methyltransferase | HpyKH16ORFG1P | |
| 1 | RM | adenine specific DNA methyltransferase | HpyKH16ORFF1P | |
| 7 | 179 aa hypothetical protein | |||
| 8 | RM | Hpy155ORF100P (74% identity) | HpyKH16ORFYP | |
| 9 | 966 aa hypothetical protein | |||
| 25 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 27 | R | HpySP325XP (89% identity) | GTNNAC | HpyKH16ORFEP |
| 28 | M | M.HpyUM084ORF7720P (92% identity) | GTNNAC | M.HpyKH16ORFEP |
| 30 | ATP-dependent helicase | |||
| 15 | alpha-1,2-fucosyltransferase | |||
| 16 | M | M.HpyKH6ORFGP (96% identity) | GATC | M.HpyKH16ORFIP |
| ??? | R | HpyKH2ORFKP (100% identity) | GATC | HpyKH16ORFIP |
| 20 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 35 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 36 | M | M.HpyKH2ORFHP (100% identity) | GCGC | M.HpyKH16ORFFP |
| 37 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 31 | exodeoxyribonuclease VII large subunit | |||
| 32 | M | M.HpySP709X (96% identity) | M.HpyKH16ORFNP | |
| 33 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 31 | 68 aa hypothetical protein HPHPM6_1194 | |||
| 32 | R | HpyKH37ORFB1P (97% identity) | HpyKH16ORFLP | |
| 33 | M | M.HpyNP07ORF2450P (99% identity) | M.HpyKH16ORFLP | |
| 34 | type I restriction-modification system subunit M | |||
| 33 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 34 | R | HpyKH44ORFBP (98% identity) | CCGG | HpyKH16ORFOP |
| 35 | M | M.HpySWT06I (99% identity) | CCGG | M.HpyKH16ORFOP |
| 36 | chaperone protein ClpB | |||
| 38 | Laminin subunit alpha-2 precursor | |||
| 40 | R | HpyGE5VIIIP (100% identity) | TCNNGA | HpyKH16ORFDP |
| 41 | M | M.HpyKH2ORFCP (100% identity) | TCNNGA | M.HpyKH16ORFDP |
| 42 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 77 | UDP-N-acetylmuramate dehydrogenase | |||
| 78 | R | HpyKH2ORFIP (100% identity) | GAATTC | HpyKH16ORFCP |
| 79 | M | M.HpyKH2ORFIP (100% identity) | GAATTC | M.HpyKH16ORFCP |
| 80 | glycosyltransferase family 8 protein | |||
| 68 | 67 aa hypothetical protein | |||
| 70 | RM | DEAD/DEAH box helicase | HpyKH16ORFTBP | |
| 71 | RM | HpyKH9ORFSP (56% identity) | HpyKH16ORFTAP | |
| 73 | -binding protein | |||
| 79 | sodium/proline symporter | |||
| 80 | R | HpyKH8ORFKP (99% identity) | GTSAC | HpyKH16ORFJP |
| 81 | M | M.HpyB8ORF1517P (99% identity) | GTSAC | M.HpyKH16ORFJP |
| 82 | restriction endonuclease | |||
| 81 | site-specific DNA-methyltransferase | |||
| 82 | R | restriction endonuclease | CCTC | HpyKH16ORFKP |
| 83 | DNA methyltransferase | |||
| 84 | M | DNA methyltransferase | CCTC | M2.HpyKH16ORFKP |
| 86 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 110 | 63 aa hypothetical protein | |||
| 111 | M | M.HpyKH3ORFC1P (44% identity) | M.HpyKH16ORFUP | |
| 113 | translational GTPase TypA | |||
| 115 | modification methylase VspI domain protein | |||
| 116 | M | M.HpyKH29ORFC1P (99% identity) | ATTAAT | M.HpyKH16ORFVP |
| 110 | HAD family hydrolase | |||
| 111 | M | M.HpyPO01I (97% identity) | CATG | M.HpyKH16ORFRP |
| ??? | R | HpyL018IP (80% identity) | CATG | HpyKH16ORFRP |
| 117 | serine acetyltransferase | |||
| 124 | cadmium-translocating P-type ATPase | |||
| 127 | M | M.HpyKH7ORFQP (99% identity) | M.HpyKH16ORFPP | |
| 128 | R | HpyNP13ORF2715P (99% identity) | HpyKH16ORFPP | |
| 129 | outer membrane beta-barrel protein HofF | |||
| 229 | cytochrome c1 | |||
| 230 | R | HpyKH2ORFGP (100% identity) | TGCA | HpyKH16ORFAP |
| 231 | M | M.HpyKH2ORFGP (99% identity) | TGCA | M.HpyKH16ORFAP |
| 232 | 68 aa hypothetical protein | |||
| 290 | DNA polymerase I | |||
| ??? | S | S.HpyAL9ORF6870P (68% identity) | S.HpyKH16ORFQP | |
| 294 | RM | HpyMA04ORF7150P (97% identity) | HpyKH16ORFQP | |
| 295 | ComF family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | ATP-dependent DNA helicase | |||
| 2 | M | site-specific DNA-methyltransferase | M.HpyKH16ORFE1P | |
| 1 | M | M.HpyKH19ORFSP (55% identity) | M.HpyKH16ORFC1P | |
| 2 | DUF1887 family protein | |||
| 2 | biotin synthase | |||
| 4 | R | HpyI023ORF6885P (92% identity) | HpyKH16ORFXP | |
| 5 | M | M.HpyMM10ORF6470P (94% identity) | M.HpyKH16ORFXP | |
| 6 | DNA/RNA non-specific endonuclease | |||
| 8 | class I SAM-dependent DNA methyltransferase | |||
| 9 | R | HpyL027ORF6825P (94% identity) | HpyKH16ORFZP | |
| 13 | M | M.Hpyfe106ORF40P (32% identity) | M.HpyKH16ORFZP | |
| 21 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 22 | R | HpyKH2ORFAP (98% identity) | HpyKH16ORFHP | |
| 23 | M | M.HpyUBN18ORFDP (93% identity) | M.HpyKH16ORFHP | |
| 24 | 73 aa hypothetical protein HMPREF1403_00513 | |||
| 22 | 66 aa hypothetical protein | |||
| 23 | R | Hpy017XIIIP (91% identity) | HpyKH16ORFA1P | |
| 25 | adenine-specific DNA methylase | |||