Helicobacter pylori KH14 |
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Putative Helicobacter pylori KH14 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,594,086 bp
GenBank #: PHMK00000000 (NZ_PHMK00000000)
REBASE acronym: HpyKH14
Org_num: 31843
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2 | 206 aa unknown | |||
| 4 | M | M.HpyIN10ORF7200P (100% identity) | M.HpyKH14ORFBP | |
| 5 | R | HpyIN10ORF7200P (100% identity) | HpyKH14ORFBP | |
| 6 | M48 family peptidase | |||
| 181 | hydroxyethylthiazole kinase | |||
| 182 | R | HpyIN10ORF2280P (100% identity) | HpyKH14ORFLP | |
| 185 | S | S.HpyIN10ORF2280P (100% identity) | S.HpyKH14ORFLP | |
| 186 | M | M.HpyIN10ORF2280P (89% identity) | M.HpyKH14ORFLP | |
| 187 | DNA cytosine methyltransferase | |||
| 292 | 61 aa hypothetical protein | |||
| 293 | S | S.HpyIN10ORF2005P (92% identity) | S.HpyKH14ORFHP | |
| 294 | M | M.HpyIN10ORF2005P (100% identity) | M.HpyKH14ORFHP | |
| ??? | R | HpyIN10ORF2005P (100% identity) | HpyKH14ORFHP | |
| 299 | 631 aa hypothetical protein U063_1207 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyIN10II (100% identity) | ATTAAT | M.HpyKH14ORFVP |
| 2 | modification methylase VspI domain protein | |||
| 5 | 112 aa hypothetical protein | |||
| 6 | M | M.HpyIN10ORF2095P (81% identity) | M.HpyKH14ORFWP | |
| 7 | R | HpyUM067ORF8480P (100% identity) | HpyKH14ORFWP | |
| 9 | DNA cytosine methyltransferase | |||
| 7 | GIY-YIG nuclease family protein | |||
| 9 | M | M.HpyIN10ORF2105P (94% identity) | M.HpyKH14ORFXP | |
| 10 | R | HpyIN10ORF2105P (87% identity) | HpyKH14ORFXP | |
| 13 | 66 aa hypothetical protein SE87_02515 | |||
| 10 | ATP-dependent helicase | |||
| 11 | M | M.HpyIN10VII (93% identity) | GTNNAC | M.HpyKH14ORFAP |
| 12 | R | HpyIN10VIIP (100% identity) | GTNNAC | HpyKH14ORFAP |
| 13 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 19 | 69 aa hypothetical protein N206_05345 | |||
| 20 | R | HpyMA02ORF3980P (98% identity) | HpyKH14ORFFP | |
| 21 | metalloendopeptidase like protein | |||
| 26 | site-specific DNA-methyltransferase | |||
| 28 | M | M1.HpyKH25ORFYP (100% identity) | GAAGA | M1.HpyKH14ORFTP |
| 29 | M | M1.HpyIN10V (95% identity) | M2.HpyKH14ORFTP | |
| 30 | R | HpyIN10VP (100% identity) | GAAGA | HpyKH14ORFTP |
| 31 | DNA-binding response regulator | |||
| 35 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 36 | M | M.HpyIN10X (98% identity) | M.HpyKH14ORFDP | |
| 37 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 53 | DNA polymerase I | |||
| ??? | S | S.HpyIN10ORF6910P (100% identity) | S.HpyKH14ORFQP | |
| 57 | RM | HpyIN10ORF6910P (100% identity) | HpyKH14ORFQP | |
| 58 | ComF family protein | |||
| 42 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyIN10ORF6360P (70% identity) | HpyKH14ORFGP | |
| 51 | exodeoxyribonuclease VII large subunit | |||
| 52 | M | M.HpyIN10VIII (98% identity) | M.HpyKH14ORFIP | |
| 53 | 64 aa hypothetical protein HMPREF1401_01153 | |||
| 53 | 64 aa hypothetical protein HMPREF1401_01153 | |||
| 54 | R | HpyIN10IIIP (82% identity) | CCGG | HpyKH14ORFJP |
| 55 | M | M.HpyIN10III (100% identity) | CCGG | M.HpyKH14ORFJP |
| 57 | chaperone protein ClpB | |||
| 74 | -binding protein | |||
| ??? | RM | HpyIN10ORF3155P (99% identity) | HpyKH14ORFRP | |
| 81 | 78 aa hypothetical protein | |||
| 80 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 81 | M | M.HpyIN10IX (100% identity) | TCNNGA | M.HpyKH14ORFEP |
| 82 | R | HpyIN10IXP (100% identity) | TCNNGA | HpyKH14ORFEP |
| 84 | Laminin subunit alpha-2 precursor | |||
| 119 | transcription termination/antitermination protein NusA | |||
| 121 | RM | HpyIN10XI (100% identity) | HpyKH14ORFOP | |
| 123 | 295 aa hypothetical protein | |||
| 111 | HAD family hydrolase | |||
| 112 | M | M.HpyIN10I (100% identity) | CATG | M.HpyKH14ORFNP |
| 114 | R | HpyIN10IP (100% identity) | CATG | HpyKH14ORFNP |
| 118 | serine acetyltransferase | |||
| 186 | type I restriction-modification system subunit M | |||
| 187 | M | M.HpyIN10ORF2275P (100% identity) | M.HpyKH14ORFMP | |
| 188 | R | HpyIN10ORF2275P (100% identity) | HpyKH14ORFMP | |
| 189 | 93 aa hypothetical protein 1_17C_ICEHptfs4b_14 | |||
| 197 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 198 | M | M1.HpyIN10IV (100% identity) | CCTC | M1.HpyKH14ORFKP |
| 200 | M | M2.HpyIN10IVP (100% identity) | CCTC | M2.HpyKH14ORFKP |
| 201 | R | HpyIN10IVP (97% identity) | CCTC | HpyKH14ORFKP |
| 202 | DNA cytosine methyltransferase | |||
| 266 | 324 aa hypothetical protein | |||
| 269 | M | M.HpyIN10VI (100% identity) | M.HpyKH14ORFCP | |
| 270 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | HpyIN10ORF6495P (93% identity) | HpyKH14ORFUP | |
| 2 | M | M.HpyIN10ORF6495P (100% identity) | M.HpyKH14ORFUP | |
| 3 | DNA/RNA non-specific endonuclease | |||
| 22 | 66 aa hypothetical protein | |||
| 23 | R | HpyIN10ORF6435P (100% identity) | HpyKH14ORFSP | |
| 26 | M | M.HpyIN10ORF6435P (99% identity) | M.HpyKH14ORFSP | |
| 28 | DUF1887 family protein | |||
| 121 | class I SAM-dependent DNA methyltransferase | |||
| ??? | R | HpyIN10ORF7130P (100% identity) | HpyKH14ORFPP | |
| ??? | M | M.HpyIN10ORF7130P (100% identity) | M.HpyKH14ORFPP | |
| 129 | ATP-dependent DNA helicase | |||