Helicobacter pylori KH13 |
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Putative Helicobacter pylori KH13 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,628,116 bp
GenBank #: PHML00000000 (NZ_PHML00000000)
REBASE acronym: HpyKH13
Org_num: 31842
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 36 | 88 aa hypothetical protein HMPREF1396_00896 | |||
| 37 | S | S.HpyKH8ORFA1P (100% identity) | S.HpyKH13ORFEP | |
| 38 | formyltetrahydrofolate deformylase | |||
| 227 | M48 family peptidase | |||
| 230 | R | HpyKH8ORFGP (95% identity) | HpyKH13ORFGP | |
| 232 | M | M.HpyKG3XV (96% identity) | M.HpyKH13ORFGP | |
| 278 | polyphosphate kinase 1 | |||
| 279 | S | S.HpyKH8ORFQP (100% identity) | S.HpyKH13ORFNP | |
| 280 | M | M.HpyKH8ORFQP (99% identity) | M.HpyKH13ORFNP | |
| ??? | R | HpyKH8ORFQP (99% identity) | HpyKH13ORFNP | |
| 284 | 631 aa hypothetical protein U063_1207 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | hypothetical protein | HpyKH13ORFA1P | |
| 2 | S41 family peptidase | |||
| 1 | R | HpyKH19ORFCP (99% identity) | CCNNGG | HpyKH13ORFBP |
| 2 | M | M.HpyP109IV (100% identity) | CCNNGG | M.HpyKH13ORFBP |
| 3 | 3'-5' exonuclease | |||
| 5 | glycosyltransferase family 8 protein | |||
| 6 | M | M.HpyKH8ORFFP (100% identity) | GAATTC | M.HpyKH13ORFDP |
| 7 | R | HpyKH8ORFFP (99% identity) | GAATTC | HpyKH13ORFDP |
| 8 | UDP-N-acetylmuramate dehydrogenase | |||
| 8 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| ??? | M | M.HpyKH8ORFZP (100% identity) | M.HpyKH13ORFYP | |
| 11 | R | HpyKH8ORFZP (100% identity) | TCNNGA | HpyKH13ORFYP |
| 12 | Laminin subunit alpha-2 precursor | |||
| 8 | 111 aa hypothetical protein | |||
| 9 | M | M.HpySP204VI (97% identity) | M.HpyKH13ORFMP | |
| 10 | alpha-1,2-fucosyltransferase | |||
| 17 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 18 | R | HpyKH8ORFDP (100% identity) | GTNNAC | HpyKH13ORFLP |
| 19 | M | M.HpyKH8ORFDP (100% identity) | GTNNAC | M.HpyKH13ORFLP |
| 20 | ATP-dependent helicase | |||
| 15 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyKH8ORFC1P (68% identity) | HpyKH13ORFKP | |
| 32 | DNA polymerase I | |||
| ??? | S | S.HpyF006ORF6815P (96% identity) | S.HpyKH13ORFTP | |
| 35 | RM | HpyKH8ORFLP (100% identity) | HpyKH13ORFTP | |
| 36 | ComF family protein | |||
| 35 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 36 | M | M.HpyKH8ORFIP (100% identity) | GCGC | M.HpyKH13ORFJP |
| 37 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 24 | 449 aa hypothetical protein | |||
| 25 | RM | restriction endonuclease | HpyKH13ORFPBP | |
| 26 | RM | DEAD/DEAH box helicase | HpyKH13ORFPAP | |
| 29 | -binding protein | |||
| 48 | sodium/proline symporter | |||
| 50 | R | HpyKH8ORFKP (100% identity) | CCTC | HpyKH13ORFZP |
| 51 | M | M.HpyKH8ORFKP (100% identity) | GTSAC | M.HpyKH13ORFZP |
| 52 | DNA cytosine methyltransferase | |||
| 52 | 59 aa hypothetical protein | |||
| 53 | M | M.HpyKH8ORFCP (100% identity) | CATG | M.HpyKH13ORFHP |
| 54 | HAD family hydrolase | |||
| 46 | 60 aa hypothetical protein | |||
| 47 | R | Hpy25AEK9ORFHP (97% identity) | CCGG | HpyKH13ORFAP |
| 48 | M | M.HpyR04V (99% identity) | CCGG | M.HpyKH13ORFAP |
| 49 | chaperone protein ClpB | |||
| 51 | site-specific DNA-methyltransferase | |||
| 52 | R | HpyKH8ORFJAP (100% identity) | CCTC | HpyKH13ORFOAP |
| 53 | IS200/IS605 family transposase | |||
| 54 | transposase | |||
| 55 | 101 aa hypothetical protein | |||
| 56 | R | restriction endonuclease | CCTC | HpyKH13ORFOBP |
| 57 | M | M2.HpyKH8ORFJP (100% identity) | CCTC | M2.HpyKH13ORFOP |
| 58 | M | M1.HpyKH8ORFJP (100% identity) | CCTC | M1.HpyKH13ORFOP |
| 60 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 63 | 65 aa hypothetical protein | |||
| ??? | R | HpyKH8ORFVP (100% identity) | HpyKH13ORFUP | |
| ??? | M | M.HpyKH8ORFVP (89% identity) | M.HpyKH13ORFUP | |
| 70 | translational GTPase TypA | |||
| 72 | modification methylase VspI domain protein | |||
| 73 | M | M.HpyKH1ORFYP (98% identity) | ATTAAT | M.HpyKH13ORFVP |
| 74 | outer membrane beta-barrel protein | |||
| 79 | YjgP/YjgQ family permease | |||
| 80 | M | M2.HpyKH8ORFNP (100% identity) | CCATC | M1.HpyKH13ORFSP |
| 81 | M | M1.HpySP307III (93% identity) | CCATC | M2.HpyKH13ORFSP |
| 82 | R | HpyKH8ORFNP (99% identity) | CCATC | HpyKH13ORFSP |
| 83 | outer membrane protein | |||
| 106 | 542 aa hypothetical protein HMPREF1411_00815 | |||
| 108 | RM | HpyKH8ORFPP (99% identity) | HpyKH13ORFQP | |
| 110 | 532 aa hypothetical protein | |||
| 111 | phosphopentomutase | |||
| 113 | R | HpyKH8ORFBP (100% identity) | TCNGA | HpyKH13ORFIP |
| 115 | M | M.HpyKH8ORFBP (100% identity) | TCNGA | M.HpyKH13ORFIP |
| 200 | cytochrome c1 | |||
| 201 | R | HpyKH8ORFHP (100% identity) | TGCA | HpyKH13ORFFP |
| 204 | M | M.HpyKH8ORFHP (99% identity) | TGCA | M.HpyKH13ORFFP |
| 205 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3 | biotin synthase | |||
| ??? | R | HpyKH8ORFYP (93% identity) | HpyKH13ORFXP | |
| 7 | M | M.HpyKH8ORFYP (99% identity) | M.HpyKH13ORFXP | |
| 8 | 117 aa hypothetical protein | |||
| 26 | rod shape-determining MreC family protein | |||
| 27 | R | HpyKH8ORFXP (99% identity) | HpyKH13ORFWP | |
| 29 | M | M.HpySP06ORF6655P (64% identity) | M.HpyKH13ORFWP | |
| 31 | 254 aa hypothetical protein | |||
| 108 | class I SAM-dependent DNA methyltransferase | |||
| ??? | R | HpyKH8ORFOP (99% identity) | HpyKH13ORFRP | |
| 115 | M | M.HpySP13ORF6995P (95% identity) | M.HpyKH13ORFRP | |
| 116 | ATP-dependent DNA helicase | |||
| 139 | 88 aa hypothetical protein HMPREF1403_00513 | |||
| 140 | M | M.HpyU005XI (98% identity) | M.HpyKH13ORFCP | |
| 142 | R | HpyKH8ORFTP (98% identity) | HpyKH13ORFCP | |
| 143 | 2-oxoglutarate:acceptor oxidoreductase | |||