Helicobacter pylori KH11 |
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Putative Helicobacter pylori KH11 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,612,177 bp
GenBank #: PHMN00000000 (NZ_PHMN00000000)
REBASE acronym: HpyKH11
Org_num: 31840
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyNP12ORF2330P (96% identity) | CCANNNNNNTC | S.HpyKH11ORFC1P |
| ??? | M | M.HpyFD662ORF3220P (95% identity) | CCANNNNNNTC | M.HpyKH11ORFC1P |
| ??? | R | HpyNP13ORF1990P (90% identity) | CCANNNNNNTC | HpyKH11ORFC1P |
| 6 | 631 aa hypothetical protein U063_1207 | |||
| 1 | M | M.HpyFD430ORFCP (96% identity) | M.HpyKH11ORFA1P | |
| 2 | 70 aa hypothetical protein | |||
| 84 | outer membrane beta-barrel protein HofF | |||
| 86 | S | S.HpyMA16XVI (67% identity) | GANNNNNNTGG | S.HpyKH11ORFTP |
| 87 | cadmium-translocating P-type ATPase | |||
| 145 | glutamine--fructose-6-phosphate transaminase | |||
| 147 | S | S.HpyL026ORF7065P (67% identity) | S.HpyKH11ORFMP | |
| 148 | 258 aa unknown | |||
| ??? | M | M.HpyKH32ORFKP (96% identity) | M.HpyKH11ORFMP | |
| 151 | R | HpyUM067ORF25P (96% identity) | HpyKH11ORFMP | |
| 152 | M48 family peptidase | |||
| 173 | hydroxyethylthiazole kinase | |||
| 174 | R | HpyUM114ORF6910P (96% identity) | HpyKH11ORFRP | |
| 177 | restriction endonuclease subunit S | |||
| 174 | HsdR family type I site-specific deoxyribonuclease | |||
| 177 | S | S.HpyMA16XV (67% identity) | GANNNNNNTGG | S.HpyKH11ORFSP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2 | 70 aa hypothetical protein | |||
| ??? | M | M.Hpyfe85ORF2990P (87% identity) | M.HpyKH11ORFB1P | |
| 5 | R | HpyI009ORF4115P (85% identity) | HpyKH11ORFB1P | |
| 6 | phosphatase PAP2 family protein | |||
| 4 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 5 | M | M.HpyMM10XIII (95% identity) | M.HpyKH11ORFHP | |
| 6 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 7 | 66 aa hypothetical protein | |||
| 8 | R | HpyNP03ORF2105P (98% identity) | ACGT | HpyKH11ORFD1P |
| 9 | M | M.HpyKH32ORFZP (97% identity) | ACGT | M.HpyKH11ORFD1P |
| 10 | GIY-YIG nuclease family protein | |||
| 9 | DNA cytosine methyltransferase | |||
| 10 | R | HpyR02ORF2225P (79% identity) | ACNGT | HpyKH11ORFE1P |
| 12 | M | M.HpyMM01II (99% identity) | ACNGT | M.HpyKH11ORFE1P |
| 13 | 108 aa hypothetical protein | |||
| 16 | modification methylase VspI domain protein | |||
| 17 | M | M.HpyKH7ORFZP (97% identity) | ATTAAT | M.HpyKH11ORFF1P |
| 16 | DNA topoisomerase subunit B | |||
| 18 | M | M.HpyKH22ORFDP (94% identity) | M.HpyKH11ORFGP | |
| 19 | R | HpyFD423ORFTP (97% identity) | HpyKH11ORFGP | |
| 20 | metalloendopeptidase like protein | |||
| ??? | hypothetical protein | |||
| ??? | M | M.HpyPE11III (100% identity) | GAAGA | M1.HpyKH11ORFYP |
| 34 | M | M1.HpyFD430ORFHP (93% identity) | M2.HpyKH11ORFYP | |
| 35 | R | HpyMA04IVP (92% identity) | HpyKH11ORFYP | |
| 36 | DNA-binding response regulator | |||
| 19 | ATP-dependent helicase | |||
| 21 | M | M.HpyMA04IX (92% identity) | GTNNAC | M.HpyKH11ORFFP |
| 22 | R | Hpy42KORF4720P (97% identity) | GTNNAC | HpyKH11ORFFP |
| 23 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 50 | DNA polymerase I | |||
| ??? | S | S.HpyKH40ORFQP (96% identity) | S.HpyKH11ORFQP | |
| 53 | RM | HpyKH17ORFC1P (98% identity) | HpyKH11ORFQP | |
| 54 | ComF family protein | |||
| 36 | alpha-1,2-fucosyltransferase | |||
| 37 | M | M.HpyMA16II (97% identity) | GATC | M.HpyKH11ORFBP |
| 38 | R | HpyMA16IIP (97% identity) | GATC | HpyKH11ORFBP |
| 39 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 47 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyMM02ORF6360P (84% identity) | HpyKH11ORFUP | |
| 50 | site-specific DNA-methyltransferase | |||
| ??? | hypothetical protein | |||
| 50 | M | M.HpyMA19V (99% identity) | GANTC | M.HpyKH11ORFWP |
| 51 | R | HpyNP11VP (97% identity) | GANTC | HpyKH11ORFWP |
| 52 | S41 family peptidase | |||
| 69 | -binding protein | |||
| 70 | RM | HpyKH15ORFOAP (63% identity) | HpyKH11ORFDP | |
| 74 | outer membrane protein | |||
| 94 | YjgP/YjgQ family permease | |||
| 95 | M | M1.HpyMA04II (98% identity) | CCATC | M1.HpyKH11ORFPP |
| 96 | M | M1.HpyG012II (92% identity) | CCATC | M2.HpyKH11ORFPP |
| 97 | R | HpyBS06ORF135P (93% identity) | CCATC | HpyKH11ORFPP |
| 98 | outer membrane protein | |||
| 76 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 77 | M | M.HpyKH37ORFAP (99% identity) | TCNNGA | M.HpyKH11ORFEP |
| 78 | R | HpyMM06XP (100% identity) | TCNNGA | HpyKH11ORFEP |
| 79 | Laminin subunit alpha-2 precursor | |||
| 99 | sodium/proline symporter | |||
| 100 | M | M2.HpyMA25VP (97% identity) | M2.HpyKH11ORFKP | |
| 102 | M | M1.HpyBG1V (95% identity) | M1.HpyKH11ORFKP | |
| 104 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 123 | 289 aa hypothetical protein HMPREF1411_00815 | |||
| 124 | RM | HpyMM11XIII (91% identity) | HpyKH11ORFNP | |
| 125 | 969 aa hypothetical protein | |||
| 194 | serine acetyltransferase | |||
| ??? | R | HpyIn44AORFAP (90% identity) | HpyKH11ORFLP | |
| 201 | M | M.HpyMM02I (97% identity) | M.HpyKH11ORFLP | |
| 202 | HAD family hydrolase | |||
| 159 | uncharacterized protein | |||
| 160 | M | M.HpySG13VI (100% identity) | CTNAG | M.HpyKH11ORFAP |
| 161 | R | HpyUM084ORF1020P (100% identity) | CTNAG | HpyKH11ORFAP |
| 164 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 171 | 68 aa hypothetical protein | |||
| 172 | M | M.HpyFD423ORFQP (98% identity) | TGCA | M.HpyKH11ORFCP |
| 173 | R | HpyKH38ORFDP (98% identity) | TGCA | HpyKH11ORFCP |
| 176 | 63 aa hypothetical protein | |||
| 233 | chaperone protein ClpB | |||
| 235 | M | M.HpyKH30ORFPP (98% identity) | CCGG | M.HpyKH11ORFIP |
| 236 | R | HpyMA25IIIP (92% identity) | CCGG | HpyKH11ORFIP |
| 237 | DNA -methyltransferase | |||
| 236 | endonuclease MjaVIP | |||
| 237 | M | M.HpyFD662ORF4100P (93% identity) | M.HpyKH11ORFJP | |
| 238 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4 | biotin synthase | |||
| ??? | R | HpyKH45ORFKP (90% identity) | HpyKH11ORFZP | |
| 8 | M | M.HpyMM04ORF6450P (94% identity) | M.HpyKH11ORFZP | |
| 9 | DNA/RNA non-specific endonuclease | |||
| 28 | 66 aa hypothetical protein | |||
| 29 | R | HpyKH22ORFVP (95% identity) | HpyKH11ORFXP | |
| ??? | M | M.HpyKH7ORFTP (93% identity) | M.HpyKH11ORFXP | |
| ??? | DUF1887 family protein | |||
| 124 | class I SAM-dependent DNA methyltransferase | |||
| 125 | R | HpyBG3ORF7185P (96% identity) | HpyKH11ORFOP | |
| ??? | M | M.Hpy4125ORFCP (95% identity) | M.HpyKH11ORFOP | |
| 131 | ATP-dependent DNA helicase | |||