Helicobacter pylori KH9 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori KH9 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,604,237 bp
GenBank #: PHMP00000000 (NZ_PHMP00000000)
REBASE acronym: HpyKH9
Org_num: 31808
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.Hpy1379ORFAP (49% identity) | S.HpyKH9ORFB1P | |
| 2 | cadmium-translocating P-type ATPase | |||
| 19 | 631 aa hypothetical protein U063_1207 | |||
| 20 | R | HpySWT08ORF2125P (90% identity) | HpyKH9ORFBP | |
| 21 | M | M.HpyKA1ORF4425P (95% identity) | M.HpyKH9ORFBP | |
| 22 | S | S.HpyKH28ORFAP (98% identity) | S.HpyKH9ORFBP | |
| 23 | polyphosphate kinase 1 | |||
| 54 | hydroxyethylthiazole kinase | |||
| 55 | R | HpyUM037ORF4700P (95% identity) | HpyKH9ORFA1P | |
| 58 | phosphatase PAP2 family protein | |||
| ??? | M | M.HpyMA16XV (92% identity) | M.HpyKH9ORFVP | |
| 62 | S | S.Hpy340ORF2210P (97% identity) | S.HpyKH9ORFVP | |
| 147 | cag pathogenicity island protein | |||
| 148 | S | S.HpyCRI7XI (97% identity) | S.HpyKH9ORFGP | |
| 149 | M | M.HpyU003XV (95% identity) | M.HpyKH9ORFGP | |
| 150 | R | HpyPE108IVP (95% identity) | HpyKH9ORFGP | |
| 152 | M48 family peptidase | |||
| 264 | outer membrane beta-barrel protein HofF | |||
| 265 | S | S.HpyCA14ORF4295P (60% identity) | S.HpyKH9ORFRP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyG001III (97% identity) | ATTAAT | M.HpyKH9ORFC1P |
| 2 | modification methylase VspI domain protein | |||
| 1 | 130 aa hypothetical protein HMPREF1421_01304 | |||
| 2 | R | HpyKH17ORFGP (99% identity) | CGWCG | HpyKH9ORFJP |
| 4 | M | M.HpyKH17ORFGP (99% identity) | CGWCG | M.HpyKH9ORFJP |
| 5 | ABC transporter permease subunit | |||
| 5 | 108 aa hypothetical protein | |||
| 6 | M | M.HpyKH30ORFYP (84% identity) | M.HpyKH9ORFD1P | |
| 7 | R | HpyR10ORF2240P (99% identity) | ACNGT | HpyKH9ORFD1P |
| 9 | DNA cytosine methyltransferase | |||
| 7 | GIY-YIG nuclease family protein | |||
| ??? | M | M.HpyDO2ORF2590P (98% identity) | M.HpyKH9ORFE1P | |
| 11 | R | HpyT006ORF2245P (87% identity) | HpyKH9ORFE1P | |
| 14 | 85 aa hypothetical protein HPOKI128_02415 | |||
| 11 | S41 family peptidase | |||
| 12 | R | Hpy449ORF5050P (95% identity) | GANTC | HpyKH9ORFF1P |
| 13 | M | M.HpyBGR4VII (99% identity) | GANTC | M.HpyKH9ORFF1P |
| 14 | DNA methyltransferase | |||
| 13 | 154 aa hypothetical protein | |||
| 16 | M | M.HpyJO7X (97% identity) | GATC | M.HpyKH9ORFKP |
| 17 | alpha-1,2-fucosyltransferase | |||
| 13 | site-specific DNA-methyltransferase | |||
| 14 | RM | DNA methyltransferase | HpyKH9ORFG1P | |
| 17 | DNA topoisomerase subunit B | |||
| 19 | M | M.HpyKH22ORFDP (95% identity) | M.HpyKH9ORFDP | |
| 20 | R | HpyKH1ORFQP (94% identity) | HpyKH9ORFDP | |
| 21 | metalloendopeptidase like protein | |||
| ??? | hypothetical protein | |||
| 23 | M | M2.HpyU009V (95% identity) | GAAGA | M1.HpyKH9ORFXP |
| 24 | M | M1.HpyJO3VII (88% identity) | M2.HpyKH9ORFXP | |
| 26 | R | HpyDO3VIP (93% identity) | HpyKH9ORFXP | |
| 27 | DNA-binding response regulator | |||
| 22 | Laminin subunit alpha-2 precursor | |||
| ??? | R | HpyPE105ORF5025P (97% identity) | TCNNGA | HpyKH9ORFZP |
| 26 | M | M.HpyKH3ORFCP (99% identity) | TCNNGA | M.HpyKH9ORFZP |
| 27 | 177 aa hypothetical protein HMPREF1397_00627 | |||
| 40 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 41 | M | M.HpyL030XIII (98% identity) | GCGC | M.HpyKH9ORFIP |
| 42 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 16 | ATP-dependent helicase | |||
| 18 | M | M.HpyGRE039ORF4460P (93% identity) | GTNNAC | M.HpyKH9ORFEP |
| 19 | R | HpySWT13IXP (93% identity) | GTNNAC | HpyKH9ORFEP |
| 20 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 43 | HAD family hydrolase | |||
| 44 | M | M.HpyKH18ORFBP (98% identity) | CATG | M.HpyKH9ORFAP |
| 45 | ulcer-associated gene restriction endonuclease | |||
| 52 | DNA polymerase I | |||
| 54 | S | S.HpyL036ORF7020P (70% identity) | S.HpyKH9ORFQP | |
| 55 | RM | HpyCOL211ORF7195P (95% identity) | HpyKH9ORFQP | |
| 56 | ComF family protein | |||
| 45 | exodeoxyribonuclease VII large subunit | |||
| 46 | M | M.HpyK052IX (97% identity) | TCGA | M.HpyKH9ORFTP |
| 47 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 38 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | Hpy49ORF6775P (67% identity) | HpyKH9ORFFP | |
| 47 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 48 | R | HpyNP06ORF1260P (78% identity) | CCGG | HpyKH9ORFUP |
| 49 | M | M.HpyCOL108IV (99% identity) | CCGG | M.HpyKH9ORFUP |
| 50 | chaperone protein ClpB | |||
| 97 | YjgP/YjgQ family permease | |||
| 98 | M | M1.HpyI018V (99% identity) | CCATC | M1.HpyKH9ORFPP |
| 99 | M | M2.HpyNP12III (93% identity) | CCATC | M2.HpyKH9ORFPP |
| 100 | R | HpyNP12IIIP (99% identity) | CCATC | HpyKH9ORFPP |
| 101 | outer membrane protein | |||
| 93 | -binding protein | |||
| ??? | RM | HpyJO3ORF3325P (87% identity) | HpyKH9ORFSP | |
| 97 | outer membrane protein | |||
| 123 | CAAX protease | |||
| 124 | RM | HpyKH22ORFRP (83% identity) | HpyKH9ORFNP | |
| 125 | DEAD/DEAH box helicase | |||
| 125 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 126 | R | HpyKH30ORFAP (99% identity) | CTNAG | HpyKH9ORFCP |
| 128 | M | M.HpyKH30ORFAP (99% identity) | CTNAG | M.HpyKH9ORFCP |
| 129 | uncharacterized protein | |||
| 175 | 68 aa hypothetical protein | |||
| 176 | M | M.HpyME12XII (55% identity) | M.HpyKH9ORFMP | |
| 177 | cytochrome c1 | |||
| 207 | 366 aa hypothetical protein | |||
| 209 | M | M.HpyKH23ORFDP (99% identity) | M.HpyKH9ORFHP | |
| 210 | penicillin-binding protein 2 | |||
| 330 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 331 | M | M1.HpyKH30ORFLP (100% identity) | CCTC | M1.HpyKH9ORFLP |
| 334 | M | M2.HpyPE136VIP (98% identity) | CCTC | M2.HpyKH9ORFLP |
| 335 | R | HpyS64ORFEP (94% identity) | CCTC | HpyKH9ORFLP |
| 336 | sodium/proline symporter | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | HpyKH28ORFGP (92% identity) | HpyKH9ORFYP | |
| 2 | M | M.HpyCO1ORF7360P (92% identity) | M.HpyKH9ORFYP | |
| 3 | DNA/RNA non-specific endonuclease | |||
| 17 | rod shape-determining MreC family protein | |||
| 18 | R | HpyL008XVP (93% identity) | HpyKH9ORFWP | |
| ??? | M | M.HpySW07ORF6545P (93% identity) | M.HpyKH9ORFWP | |
| 23 | DUF1887 family protein | |||
| 124 | class I SAM-dependent DNA methyltransferase | |||
| 125 | R | HpyP008ORF6860P (95% identity) | HpyKH9ORFOP | |
| ??? | M | M.HpySWT12ORF6945P (94% identity) | M.HpyKH9ORFOP | |
| 131 | ATP-dependent DNA helicase | |||