Helicobacter pylori KH8 |
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Putative Helicobacter pylori KH8 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,643,985 bp
GenBank #: PHMQ00000000 (NZ_PHMQ00000000)
REBASE acronym: HpyKH8
Org_num: 31807
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 40 | 85 aa hypothetical protein HMPREF1396_00896 | |||
| 41 | S | S.HpyKH13ORFEP (100% identity) | S.HpyKH8ORFA1P | |
| 42 | formyltetrahydrofolate deformylase | |||
| 98 | 678 aa hypothetical protein | |||
| 99 | S | restriction endonuclease | S1.HpyKH8ORFMP | |
| 100 | S | S.HpyKH21ORFJP (46% identity) | S2.HpyKH8ORFMP | |
| 101 | DNA polymerase I | |||
| 130 | LPP20 lipofamily protein | |||
| 131 | S | S.HpySP315XIV (95% identity) | S.HpyKH8ORFGP | |
| 132 | M | M.HpySP401ORF7275P (95% identity) | M.HpyKH8ORFGP | |
| 133 | R | HpyKH13ORFGP (95% identity) | HpyKH8ORFGP | |
| 134 | M48 family peptidase | |||
| 279 | polyphosphate kinase 1 | |||
| 280 | S | S.HpyKH13ORFNP (100% identity) | S.HpyKH8ORFQP | |
| 281 | M | M.HpyKH13ORFNP (99% identity) | M.HpyKH8ORFQP | |
| ??? | R | HpyKH13ORFNP (99% identity) | HpyKH8ORFQP | |
| 285 | 631 aa hypothetical protein U063_1207 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| ??? | M | M.HpyKH13ORFYP (100% identity) | M.HpyKH8ORFZP | |
| 11 | R | HpyKH13ORFYP (100% identity) | TCNNGA | HpyKH8ORFZP |
| 12 | Laminin subunit alpha-2 precursor | |||
| 9 | glycosyltransferase family 8 protein | |||
| 10 | M | M.HpyKH13ORFDP (100% identity) | GAATTC | M.HpyKH8ORFFP |
| 11 | R | HpyKH13ORFDP (99% identity) | GAATTC | HpyKH8ORFFP |
| 12 | UDP-N-acetylmuramate dehydrogenase | |||
| 6 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 7 | M | M.HpyKH13ORFJP (100% identity) | GCGC | M.HpyKH8ORFIP |
| 8 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 7 | HrgA protein, partial | |||
| 9 | M | M.HpyT021IX (95% identity) | GATC | M.HpyKH8ORFAP |
| 10 | alpha-1,2-fucosyltransferase | |||
| 12 | S41 family peptidase | |||
| ??? | RM | HpyPE16ORF6835P (89% identity) | HpyKH8ORFC1P | |
| 18 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 23 | 968 aa hypothetical protein | |||
| 26 | RM | HpyKH13ORFQP (99% identity) | HpyKH8ORFPP | |
| 28 | 542 aa hypothetical protein HMPREF1411_00815 | |||
| 23 | -binding protein | |||
| 24 | RM | DEAD/DEAH box helicase | HpyKH8ORFUAP | |
| 27 | RM | restriction endonuclease | HpyKH8ORFUBP | |
| 28 | 449 aa hypothetical protein | |||
| 29 | DNA-binding response regulator | |||
| 30 | R | HpyKG8VP (98% identity) | GAAGA | HpyKH8ORFB1P |
| 31 | M | M2.HpyBS06ORF810P (97% identity) | GAAGA | M1.HpyKH8ORFB1P |
| 32 | M | M2.HpyU009V (95% identity) | GAAGA | M2.HpyKH8ORFB1P |
| 33 | DNA -methyltransferase | |||
| 45 | exodeoxyribonuclease VII large subunit | |||
| 46 | M | M.HpyKH6ORFXP (100% identity) | TCGA | M.HpyKH8ORFRP |
| 47 | 132 aa hypothetical protein HMPREF1392_01214 | |||
| 51 | outer membrane protein | |||
| 52 | M | M.HpyKH13ORFIP (100% identity) | TCNGA | M.HpyKH8ORFBP |
| 53 | R | HpyKH13ORFIP (100% identity) | TCNGA | HpyKH8ORFBP |
| 55 | phosphopentomutase | |||
| 47 | 132 aa hypothetical protein HMPREF1392_01214 | |||
| 48 | R | HpyP009IVP (95% identity) | CCGG | HpyKH8ORFSP |
| 49 | M | M.HpyKH6ORFWP (100% identity) | CCGG | M.HpyKH8ORFSP |
| 50 | chaperone protein ClpB | |||
| 52 | outer membrane protein | |||
| 53 | R | HpyKH13ORFSP (99% identity) | CCATC | HpyKH8ORFNP |
| 54 | M | M1.HpySP307III (93% identity) | CCATC | M1.HpyKH8ORFNP |
| 55 | M | M1.HpyKH13ORFSP (100% identity) | CCATC | M2.HpyKH8ORFNP |
| 56 | YjgP/YjgQ family permease | |||
| 50 | 3'-5' exonuclease | |||
| 51 | M | M.HpyP109IV (100% identity) | CCNNGG | M.HpyKH8ORFEP |
| 52 | R | HpySWT12ORF3110P (100% identity) | CCNNGG | HpyKH8ORFEP |
| 53 | 3'-5' exonuclease | |||
| 82 | 65 aa hypothetical protein | |||
| ??? | R | HpyKH26ORFB1P (100% identity) | HpyKH8ORFVP | |
| 86 | M | M.HpyMM10ORF2070P (89% identity) | M.HpyKH8ORFVP | |
| 87 | 109 aa hypothetical protein | |||
| 90 | modification methylase VspI domain protein | |||
| 91 | M | M.HpyKH6ORFB1P (98% identity) | ATTAAT | M.HpyKH8ORFWP |
| 97 | ComF family protein | |||
| 98 | RM | HpyKH13ORFTP (100% identity) | HpyKH8ORFLP | |
| 99 | restriction endonuclease | |||
| 115 | HAD family hydrolase | |||
| 116 | M | M.HpyKH13ORFHP (100% identity) | CATG | M.HpyKH8ORFCP |
| 117 | 59 aa hypothetical protein | |||
| 158 | 68 aa hypothetical protein | |||
| 159 | M | M.HpyKH6ORFJP (100% identity) | TGCA | M.HpyKH8ORFHP |
| 161 | R | HpyKH13ORFFP (100% identity) | TGCA | HpyKH8ORFHP |
| 163 | cytochrome c1 | |||
| 188 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 189 | R | HpyKH13ORFLP (100% identity) | GTNNAC | HpyKH8ORFDP |
| 190 | M | M.HpyKH13ORFLP (100% identity) | GTNNAC | M.HpyKH8ORFDP |
| 191 | ATP-dependent helicase | |||
| 303 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 304 | M | M1.HpyKH13ORFOP (100% identity) | CCTC | M1.HpyKH8ORFJP |
| 306 | M | M2.HpyKH13ORFOP (100% identity) | CCTC | M2.HpyKH8ORFJP |
| 307 | R | restriction endonuclease | CCTC | HpyKH8ORFJBP |
| 308 | transposase | |||
| 309 | 101 aa hypothetical protein | |||
| 310 | IS200/IS605 family transposase | |||
| 311 | R | HpyKH13ORFOAP (100% identity) | CCTC | HpyKH8ORFJAP |
| 312 | site-specific DNA-methyltransferase | |||
| 311 | DNA cytosine methyltransferase | |||
| 312 | M | M.HpyKH13ORFZP (100% identity) | GTSAC | M.HpyKH8ORFKP |
| 313 | R | HpyKH13ORFZP (100% identity) | GTSAC | HpyKH8ORFKP |
| 314 | sodium/proline symporter | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5 | biotin synthase | |||
| ??? | R | HpyKH13ORFXP (93% identity) | HpyKH8ORFYP | |
| 9 | M | M.HpyKH13ORFXP (99% identity) | M.HpyKH8ORFYP | |
| 10 | 117 aa hypothetical protein | |||
| 14 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 15 | R | HpyKH13ORFCP (98% identity) | HpyKH8ORFTP | |
| ??? | M | M.HpyBR3ORF3635P (98% identity) | M.HpyKH8ORFTP | |
| 18 | 88 aa hypothetical protein HMPREF1403_00513 | |||
| 19 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyME45ORF7220P (95% identity) | M.HpyKH8ORFOP | |
| 23 | R | HpyKH13ORFRP (99% identity) | HpyKH8ORFOP | |
| 26 | class I SAM-dependent DNA methyltransferase | |||
| 27 | rod shape-determining MreC family protein | |||
| 28 | R | HpyKH13ORFWP (99% identity) | HpyKH8ORFXP | |
| ??? | M | M.HpyPU004ORF6525P (63% identity) | M.HpyKH8ORFXP | |
| 35 | 254 aa hypothetical protein | |||