Helicobacter pylori KH6 |
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Putative Helicobacter pylori KH6 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,539,929 bp
GenBank #: PHMS00000000 (NZ_PHMS00000000)
REBASE acronym: HpyKH6
Org_num: 31726
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyIS1ORF4750P (95% identity) | S.HpyKH6ORFNP | |
| 2 | M | M.HpyC66XI (88% identity) | M.HpyKH6ORFNP | |
| 3 | phosphatase PAP2 family protein | |||
| 1 | S | S.HpyKH12ORFXP (99% identity) | S.HpyKH6ORFQP | |
| 2 | M | M.HpyB38ORF445P (97% identity) | M.HpyKH6ORFQP | |
| 3 | R | HpyKH12ORFXP (80% identity) | HpyKH6ORFQP | |
| 32 | hydroxyethylthiazole kinase | |||
| 33 | R | HpyKH12ORFVP (98% identity) | HpyKH6ORFE1P | |
| 181 | type I restriction endonuclease subunit R | |||
| ??? | M | M.HpyL009ORF7380P (62% identity) | M.HpyKH6ORFVP | |
| 184 | 258 aa unknown | |||
| 185 | S | S.HpyKH12ORFIP (100% identity) | S.HpyKH6ORFVP | |
| 186 | glutamine--fructose-6-phosphate transaminase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | 61 aa hypothetical protein | |||
| 2 | M | M2.HpyF006VP (99% identity) | CCTC | M.HpyKH6ORFFP |
| 3 | sodium/proline symporter | |||
| ??? | M | M.HpyKH12ORFB1P (100% identity) | M.HpyKH6ORFH1P | |
| 3 | glycosyltransferase family 8 protein | |||
| 1 | M | M.HpyKH8ORFWP (98% identity) | ATTAAT | M.HpyKH6ORFB1P |
| 2 | modification methylase VspI domain protein | |||
| 1 | 74 aa hypothetical protein | |||
| 2 | M | M2.HpySP06XII (95% identity) | GAAGA | M.HpyKH6ORFRP |
| 3 | R | HpyT008VIP (58% identity) | GAAGA | HpyKH6ORFRP |
| 4 | DNA-binding response regulator | |||
| 4 | 162 aa hypothetical protein | |||
| 5 | M | M.HpyKH12ORFSP (100% identity) | M.HpyKH6ORFC1P | |
| 6 | catalase family peroxidase | |||
| 5 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 6 | M | M.HpyKH8ORFIP (99% identity) | GCGC | M.HpyKH6ORFPP |
| 7 | 76 aa hypothetical protein | |||
| 10 | 64 aa hypothetical protein | |||
| ??? | hypothetical protein | |||
| 15 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyP005ORF6595P (88% identity) | HpyKH6ORFG1P | |
| 18 | 107 aa hypothetical protein BB437_07770 | |||
| 17 | ATP-dependent helicase | |||
| 18 | M | M.Hpy14039ORFGP (98% identity) | GTNNAC | M.HpyKH6ORFIP |
| 19 | R | HpyKH12ORFHP (93% identity) | GTNNAC | HpyKH6ORFIP |
| 20 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 23 | Laminin subunit alpha-2 precursor | |||
| ??? | R | Hpy24AORFMP (98% identity) | TCNNGA | HpyKH6ORFD1P |
| 29 | M | M.HpyP010X (98% identity) | TCNNGA | M.HpyKH6ORFD1P |
| 30 | 215 aa hypothetical protein HMPREF1397_00627 | |||
| 29 | DNA topoisomerase subunit B | |||
| 31 | M | M.HpyLI04ORF2335P (97% identity) | GTAC | M.HpyKH6ORFHP |
| 32 | R | HpyQ35ORFOP (96% identity) | GTAC | HpyKH6ORFHP |
| 33 | metalloendopeptidase like protein | |||
| 50 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 51 | R | HpyKH12ORFCP (100% identity) | GATC | HpyKH6ORFGP |
| 52 | M | M.HpyKH16ORFIP (96% identity) | M.HpyKH6ORFGP | |
| 53 | alpha-1,2-fucosyltransferase | |||
| 67 | restriction endonuclease | |||
| ??? | M | M.HpyIR3ORF530P (98% identity) | M.HpyKH6ORFYP | |
| 70 | 5'-nucleotidase protein | |||
| 80 | HAD family hydrolase | |||
| 81 | M | M.HpyKH12ORFNP (99% identity) | CATG | M.HpyKH6ORFZP |
| 83 | R | HpyKH12ORFNP (100% identity) | CATG | HpyKH6ORFZP |
| 86 | serine acetyltransferase | |||
| 152 | elongation factor Ts | |||
| 154 | R | HpyC125VIP (99% identity) | TGCA | HpyKH6ORFJP |
| 156 | M | M.HpyKH8ORFHP (100% identity) | TGCA | M.HpyKH6ORFJP |
| 157 | 68 aa hypothetical protein | |||
| 204 | 967 aa hypothetical protein | |||
| 207 | RM | HpyKH12ORFJP (99% identity) | HpyKH6ORFUP | |
| 208 | 227 aa Hypothetical protein | |||
| 229 | chaperone protein ClpB | |||
| 233 | M | M.HpyKH8ORFSP (100% identity) | CCGG | M.HpyKH6ORFWP |
| 234 | R | HpyG004IIP (83% identity) | CCGG | HpyKH6ORFWP |
| 235 | 132 aa hypothetical protein HMPREF1392_01214 | |||
| 235 | 132 aa hypothetical protein HMPREF1392_01214 | |||
| 236 | M | M.HpyKH8ORFRP (100% identity) | TCGA | M.HpyKH6ORFXP |
| 237 | exodeoxyribonuclease VII large subunit | |||
| 268 | ComF family protein | |||
| 269 | RM | HpyKH12ORFMP (100% identity) | HpyKH6ORFSP | |
| 270 | S | S.HpyLI24ORF7250P (89% identity) | S.HpyKH6ORFSP | |
| 271 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2 | biotin synthase | |||
| 4 | R | HpyCOL121ORF6840P (91% identity) | HpyKH6ORFF1P | |
| 5 | M | M.HpyGE13ORF6615P (95% identity) | M.HpyKH6ORFF1P | |
| 6 | DNA/RNA non-specific endonuclease | |||
| 200 | ATP-dependent DNA helicase | |||
| ??? | M | M.Hpy015ORF7520P (97% identity) | M.HpyKH6ORFTP | |
| 204 | R | HpyLI12ORF7260P (94% identity) | HpyKH6ORFTP | |
| 207 | class I SAM-dependent DNA methyltransferase | |||