Escherichia coli O157:H7 TR01 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli O157:H7 TR01 RM systems
Ref: Goncuoglu,M. et al. Ann. Microbiol. 60 (3), 489-494 (2010)
REBASE ref # 27716
Complete sequence: 5,569,804 bp
GenBank #: CP033605
REBASE acronym: EcoTR01
Org_num: 31760
All begin EEL45_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 28305 | endoribonuclease SymE | |||
| 28310 | S | S.EcoUM1887ORF20145P (100% identity) | CACNNNNNNNCTGG | S.EcoTR01ORF28315P |
| 28315 | M | M.SspS13ORF3945P (100% identity) | CACNNNNNNNCTGG | M.EcoTR01ORF28315P |
| 28320 | R | EcoLR711ORF34080P (100% identity) | CACNNNNNNNCTGG | EcoTR01ORF28315P |
| 28325 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8635 | TrmB family transcriptional regulator | |||
| 8640 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoTR01ORF8640P | |
| 8655 | 61 aa hypothetical protein | |||
| 9065 | TrmB family transcriptional regulator | |||
| 9070 | M | M.EcoTWORF1742P (100% identity) | M.EcoTR01ORF9070P | |
| 9075 | DUF1737 domain-containing protein | |||
| 13335 | drug/metabolite exporter YedA | |||
| 13340 | V | V.SsoSE61DcmP (100% identity) | V.EcoTR01DcmP | |
| 13345 | M | M.Sbo9733DcmP (99% identity) | CCWGG | M.EcoTR01DcmP |
| 13350 | phosphohydrolase | |||
| 14235 | NinE family protein | |||
| 14240 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoTR01ORF14240P |
| 14245 | recombination protein NinB | |||
| 15410 | DUF1737 domain-containing protein | |||
| 15415 | M | M.EcoTWORF1742P (100% identity) | M.EcoTR01ORF15415P | |
| 15420 | TrmB family transcriptional regulator | |||
| 17320 | NinE family protein | |||
| 17325 | M | M.EcoTWORF3263P (100% identity) | GATC | M.EcoTR01ORF17325P |
| 17330 | endonuclease | |||
| 17510 | 76 aa hypothetical protein | |||
| 17515 | M | M.EspP079ORF2847P (100% identity) | GATC | M.EcoTR01ORF17515P |
| 17520 | DUF1382 family protein | |||
| 22235 | DNA-binding transcriptional regulator Fis | |||
| 22240 | M | M.SdyFF51ORF20390P (100% identity) | ATGCAT | M.EcoTR01ORF22240P |
| 22245 | DUF2556 domain-containing protein | |||
| 22770 | ribulose-phosphate 3-epimerase | |||
| 22775 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoTR01DamP |
| 22780 | cell division protein DamX | |||
| 26775 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.EcoTR01ORF26780P | |
| 26790 | Eae protein | |||
| 28075 | DEAD/DEAH box helicase | |||
| 28080 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoTR01ORF28080P |