Helicobacter pylori KH4 |
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Putative Helicobacter pylori KH4 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,600,283 bp
GenBank #: PHMT00000000 (NZ_PHMT00000000)
REBASE acronym: HpyKH4
Org_num: 31693
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyME45XX (44% identity) | S.HpyKH4ORFA1P | |
| 3 | HsdR family type I site-specific deoxyribonuclease | |||
| 1 | restriction endonuclease subunit S | |||
| 3 | R | HpyMA16XVP (94% identity) | HpyKH4ORFB1P | |
| 6 | hydroxyethylthiazole kinase | |||
| 1 | S | S.HpyK016ORF2780P (98% identity) | CCANNNNNNTTT | S.HpyKH4ORFH1P |
| 2 | M | M.HpyKH37ORFCP (97% identity) | CCANNNNNNTTT | M.HpyKH4ORFH1P |
| ??? | R | HpyL012ORF4440P (88% identity) | CCANNNNNNTTT | HpyKH4ORFH1P |
| 5 | 631 aa hypothetical protein U063_1207 | |||
| 32 | M48 family peptidase | |||
| 35 | R | HpyKH29ORFEP (94% identity) | HpyKH4ORFJP | |
| 36 | M | M.HpyKH45ORFMP (91% identity) | M.HpyKH4ORFJP | |
| 37 | S | S.HpyFD535ORFD1P (69% identity) | S.HpyKH4ORFJP | |
| 39 | glutamine--fructose-6-phosphate transaminase | |||
| 57 | phosphatase PAP2 family protein | |||
| 58 | M | M.HpyMM09ORF4050P (96% identity) | M.HpyKH4ORFC1P | |
| 95 | cadmium-translocating P-type ATPase | |||
| 97 | S | S.HpyI008XV (63% identity) | S.HpyKH4ORFZP | |
| 98 | outer membrane beta-barrel protein HofF | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyKH2ORFA1P (98% identity) | ATTAAT | M.HpyKH4ORFD1P |
| 2 | modification methylase VspI domain protein | |||
| 5 | 108 aa hypothetical protein | |||
| 6 | M | M.HpyKH7ORFA1P (99% identity) | ACNGT | M.HpyKH4ORFE1P |
| 7 | R | HpyKH39ORFA1P (99% identity) | ACNGT | HpyKH4ORFE1P |
| 9 | DNA cytosine methyltransferase | |||
| 8 | glycosyltransferase family 8 protein | |||
| 9 | R | HpyAs009ORF6795P (98% identity) | HpyKH4ORFHP | |
| 10 | DNA cytosine methyltransferase | |||
| 7 | GIY-YIG nuclease family protein | |||
| 9 | M | M.Hpy2099ORF2395P (93% identity) | M.HpyKH4ORFF1P | |
| ??? | R | HpyKH17ORFF1P (98% identity) | HpyKH4ORFF1P | |
| 14 | 67 aa hypothetical protein HPOKI128_02415 | |||
| 9 | 204 aa hypothetical protein | |||
| 10 | M | M.HpyMA06ORF6885P (99% identity) | M.HpyKH4ORFIP | |
| 11 | 68 aa hypothetical protein | |||
| 12 | carbon starvation protein A | |||
| 13 | R | HpySG13VIIP (100% identity) | CTRYAG | HpyKH4ORFMP |
| 14 | M | M.HpyU424V (99% identity) | CTRYAG | M.HpyKH4ORFMP |
| 15 | outer membrane family protein | |||
| 8 | ATP-dependent helicase | |||
| 9 | M | M.HpyMA02III (92% identity) | GTNNAC | M.HpyKH4ORFLP |
| 10 | R | Hpyfe79ORF2705P (99% identity) | GTNNAC | HpyKH4ORFLP |
| 11 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 19 | outer membrane protein | |||
| 20 | RM | HpyKH2ORFTP (81% identity) | HpyKH4ORFDP | |
| 23 | -binding protein | |||
| 40 | HAD family hydrolase | |||
| 41 | M | M.HpyKH34ORFDP (95% identity) | M.HpyKH4ORFCP | |
| 42 | IceA2 protein | |||
| 39 | DNA topoisomerase subunit B | |||
| 41 | M | M.HpyKH39ORFHP (97% identity) | M.HpyKH4ORFAP | |
| 42 | R | HpyKH22ORFDP (96% identity) | HpyKH4ORFAP | |
| 43 | metalloendopeptidase like protein | |||
| 35 | alpha-1,2-fucosyltransferase | |||
| 37 | M | M.Hpy2ALORF6550P (97% identity) | GATC | M.HpyKH4ORFKP |
| 38 | 341 aa hypothetical protein | |||
| 56 | 182 aa hypothetical protein 166_ICEHptfs4c_06 | |||
| 59 | R | HpyKH11ORFWP (67% identity) | HpyKH4ORFG1P | |
| 60 | S41 family peptidase | |||
| 57 | 60 aa hypothetical protein | |||
| 58 | R | HpyNCI14VIIIP (98% identity) | TCNGA | HpyKH4ORFEP |
| 60 | M | M.HpyFD719ORF7810P (97% identity) | TCNGA | M.HpyKH4ORFEP |
| 61 | 74 aa hypothetical protein HMPREF1406_00819 | |||
| 56 | 970 aa hypothetical protein | |||
| 59 | RM | Hpy7ORFAP (91% identity) | HpyKH4ORFXP | |
| 60 | 95 aa hypothetical protein HMPREF1393_01376, partial | |||
| 87 | 177 aa hypothetical protein HMPREF1397_00627 | |||
| ??? | M | M.HpyL006X (98% identity) | M.HpyKH4ORFYP | |
| 90 | R | type II restriction endonuclease | HpyKH4ORFYP | |
| 91 | Laminin subunit alpha-2 precursor | |||
| 109 | sodium/proline symporter | |||
| 110 | R | Hpy381FORFMP (99% identity) | GTSAC | HpyKH4ORFTP |
| 111 | M | M.HpyC11637ORF252P (100% identity) | GTSAC | M.HpyKH4ORFTP |
| 112 | restriction endonuclease | |||
| 111 | site-specific DNA-methyltransferase | |||
| 112 | R | HpyKH40ORFXP (99% identity) | CCTC | HpyKH4ORFUP |
| 113 | M | M2.HpyKH40ORFXP (98% identity) | CCTC | M2.HpyKH4ORFUP |
| 114 | M | M1.Hpy173ORF4740P (97% identity) | CCTC | M1.HpyKH4ORFUP |
| 116 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 119 | 156 aa hypothetical protein | |||
| 120 | M | M.Hpyoh1ORF4535P (100% identity) | M.HpyKH4ORFFP | |
| 121 | translation elongation factor 4 | |||
| 130 | ComF family protein | |||
| ??? | RM | HpyMA02ORF7210P (93% identity) | HpyKH4ORFVP | |
| ??? | S | S.HpyI012ORF7150P (92% identity) | S.HpyKH4ORFVP | |
| 135 | DNA polymerase I | |||
| 133 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 134 | M | M.HpyKH2ORFHP (98% identity) | M.HpyKH4ORFBP | |
| 135 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 164 | uncharacterized protein | |||
| 166 | M | M.HpySG13VI (100% identity) | CTNAG | M.HpyKH4ORFGP |
| 169 | R | HpyKH17ORFEP (99% identity) | CTNAG | HpyKH4ORFGP |
| 170 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 242 | chaperone protein ClpB | |||
| 246 | M | M.HpyGE13V (98% identity) | CCGG | M.HpyKH4ORFNP |
| 247 | R | HpySP304VIP (91% identity) | CCGG | HpyKH4ORFNP |
| 248 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 249 | 63 aa hypothetical protein | |||
| 250 | M | M.HpyP77ORFWP (98% identity) | TCGA | M.HpyKH4ORFOP |
| 251 | exodeoxyribonuclease VII large subunit | |||
| 280 | helicase | |||
| ??? | RM | HpyL008ORF6430P (87% identity) | HpyKH4ORFSP | |
| 284 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 295 | DNA-binding response regulator | |||
| 296 | R | HpyMA04IVP (97% identity) | GAAGA | HpyKH4ORFQP |
| 297 | M | site-specific DNA-methyltransferase | M.HpyKH4ORFQP | |
| 298 | type III restriction endonuclease subunit R | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 51 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyBG8ORF7020P (96% identity) | M.HpyKH4ORFWP | |
| 56 | R | HpyBG8ORF7020P (94% identity) | HpyKH4ORFWP | |
| 59 | type II S restriction-modification protein | |||
| 318 | DNA/RNA non-specific endonuclease | |||
| 319 | M | M.HpyBG8XI (95% identity) | M.HpyKH4ORFPP | |
| 320 | R | HpyKH22ORFYP (94% identity) | HpyKH4ORFPP | |
| 321 | biotin synthase | |||