Helicobacter pylori GD63 |
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Putative Helicobacter pylori GD63 RM systems
Ref: Nguyen Hoang,T.P. et al. unpublished
REBASE ref # 27595
Complete sequence: 1,581,994 bp
GenBank #: CP031558
REBASE acronym: HpyGD63
Org_num: 31435
All begin DZC36_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 75 | FAD-dependent thymidylate synthase | |||
| 80 | S | S.Hpyfe17ORF7520P (97% identity) | S.HpyGD63ORF90P | |
| 85 | CAAX protease | |||
| 90 | M | M.HpyMA06X (95% identity) | M.HpyGD63ORF90P | |
| 95 | R | HpyHP22ORF2730P (94% identity) | HpyGD63ORF90P | |
| 100 | M48 family peptidase | |||
| 2850 | RNA degradosome polyphosphate kinase | |||
| 2860 | S | S.HpyL022ORF2360P (98% identity) | S.HpyGD63ORF2865P | |
| 2865 | M | M.Hpyfe104ORF3000P (95% identity) | M.HpyGD63ORF2865P | |
| ??? | R | HpyLI41XIVP (90% identity) | HpyGD63ORF2865P | |
| 2880 | DUF115 domain-containing protein | |||
| 4475 | outer membrane beta-barrel protein HofF | |||
| 4480 | S | S.HpyHPYORF3345P (94% identity) | S.HpyGD63ORF4480P | |
| 4485 | cadmium-translocating P-type ATPase | |||
| 4780 | hydroxyethylthiazole kinase | |||
| 4785 | R | HpyV009ORF2565P (94% identity) | HpyGD63ORF4795P | |
| 4790 | S | S.HpyGD63ORF4480P (96% identity) | S.HpyGD63ORF4795P | |
| 4795 | M | M.HpyMM11ORF4090P (93% identity) | M.HpyGD63ORF4795P | |
| 4800 | DNA cytosine methyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 185 | restriction endonuclease subunit S | |||
| 190 | M | SAM-dependent methyltransferase | M.HpyGD63ORF190P | |
| 195 | R | Hpyfe32ORF7565P (99% identity) | TGCA | HpyGD63ORF190P |
| 200 | 131 aa hypothetical protein | |||
| 730 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpyV002ORF265P (97% identity) | HpyGD63ORF735P | |
| 745 | site-specific DNA-methyltransferase | |||
| ??? | hypothetical protein | |||
| 745 | M | M.Hpyfe89ORF7150P (99% identity) | GANTC | M.HpyGD63ORF745P |
| 750 | R | HpySG02IXP (98% identity) | GANTC | HpyGD63ORF745P |
| 755 | DNA methyltransferase | |||
| 795 | TerC family protein | |||
| 800 | M | M2.Hpyfe12ORF7025P (99% identity) | CCTC | M1.HpyGD63ORF800P |
| 805 | M | M1.Hpyfe1ORF7000P (99% identity) | M2.HpyGD63ORF800P | |
| 810 | sodium/proline symporter PutP | |||
| 1215 | alpha-1,2-fucosyltransferase | |||
| 1220 | M | M.HpyH137ORF7070P (98% identity) | GATC | M.HpyGD63ORF1220P |
| 1225 | R | Hpybs3ORFGP (96% identity) | GATC | HpyGD63ORF1220P |
| 1235 | [acyl-carrier-protein] S-malonyltransferase | |||
| 1515 | AAA family ATPase | |||
| 1520 | R | R2.HpyTN2ORF2420P (96% identity) | HpyGD63ORF1520P | |
| 1525 | pseudaminic acid synthase | |||
| 1940 | exodeoxyribonuclease VII large subunit | |||
| 1945 | M | M.Hpyfe72ORF5775P (99% identity) | TCGA | M.HpyGD63ORF1945P |
| 1950 | 204 aa hypothetical protein | |||
| 1950 | 204 aa hypothetical protein | |||
| 1955 | R | HpyC104VP (98% identity) | CCGG | HpyGD63ORF1960P |
| 1960 | M | M.HpyU437IV (99% identity) | CCGG | M.HpyGD63ORF1960P |
| 1965 | AAA family ATPase | |||
| 2200 | DUF2334 domain-containing protein | |||
| 2205 | R | HpyV004VP (99% identity) | CTNAG | HpyGD63ORF2210P |
| 2210 | M | M.HpyV004V (100% identity) | CTNAG | M.HpyGD63ORF2210P |
| 2215 | 125 aa hypothetical protein | |||
| 2420 | elongation factor 4 | |||
| 2425 | M | M.Hpyfe123ORF5560P (99% identity) | M.HpyGD63ORF2425P | |
| 2430 | 92 aa hypothetical protein | |||
| 2950 | outer membrane protein | |||
| 2955 | M | M.Hpy321ORFMP (98% identity) | ATTAAT | M.HpyGD63ORF2955P |
| 2960 | lipopolysaccharide heptosyltransferase family | |||
| 2965 | translational GTPase TypA | |||
| 2970 | M | M.HpyV008II (99% identity) | ACNGT | M.HpyGD63ORF2970P |
| 2975 | R | HpyK115ORF2335P (99% identity) | ACNGT | HpyGD63ORF2970P |
| 2980 | catalase | |||
| 3065 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3070 | M | M.HpyV009XI (98% identity) | M.HpyGD63ORF3070P | |
| 3075 | R | HpyK109VIIIP (99% identity) | HpyGD63ORF3070P | |
| 3080 | M23 family peptidase | |||
| 3955 | 477 aa hypothetical protein | |||
| 3960 | RM | HpyNP13ORF3295P (81% identity) | HpyGD63ORF3960P | |
| 3965 | (Fe-S)-binding protein | |||
| 4620 | osmoprotection protein | |||
| 4625 | R | Hpyfe78ORF3885P (100% identity) | CGWCG | HpyGD63ORF4630P |
| 4630 | M | M.Hpyfe8ORF2470P (99% identity) | CGWCG | M.HpyGD63ORF4630P |
| 4635 | 90 aa hypothetical protein | |||
| 4795 | type I restriction-modification system subunit | |||
| 4800 | M | M.HpyID5ORF4340P (99% identity) | M.HpyGD63ORF4800P | |
| 4805 | R | HpyMM11ORF4095P (97% identity) | HpyGD63ORF4800P | |
| 4810 | PAP2 family protein | |||
| 5070 | flagellar hook protein FlgE | |||
| 5075 | R | Hpy199ORFRP (98% identity) | GTNNAC | HpyGD63ORF5080P |
| 5080 | M | M.HpyF216ORFJP (96% identity) | GTNNAC | M.HpyGD63ORF5080P |
| 5085 | ATP-dependent helicase | |||
| 5760 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5765 | M | M.Hpyfe85ORF2060P (99% identity) | M.HpyGD63ORF5765P | |
| 5770 | R | HpyTW16XIIP (96% identity) | HpyGD63ORF5765P | |
| 5775 | Laminin subunit alpha-2 precursor | |||
| 5950 | 144 aa hypothetical protein | |||
| 5955 | M | M.Hpyfe39ORF1895P (95% identity) | M.HpyGD63ORF5955P | |
| 5960 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6185 | outer membrane beta-barrel protein HofH | |||
| 6190 | M | M.HpyU424V (99% identity) | CTRYAG | M.HpyGD63ORF6190P |
| 6195 | R | HpySG13VIIP (99% identity) | CTRYAG | HpyGD63ORF6190P |
| 6200 | carbon starvation protein A | |||
| 6245 | purine-nucleoside phosphorylase | |||
| 6250 | M | M.HpyK022VIII (99% identity) | TCNGA | M.HpyGD63ORF6250P |
| 6255 | R | Hpyfe58ORF1625P (99% identity) | TCNGA | HpyGD63ORF6250P |
| 6260 | purine-nucleoside phosphorylase | |||
| 6435 | HAD family hydrolase | |||
| 6440 | M | M.HpyJA103I (98% identity) | CATG | M.HpyGD63ORF6440P |
| 6445 | IceA2 protein | |||
| 7590 | DNA polymerase I | |||
| 7595 | S | S.Hpyfe38ORF270P (94% identity) | S.HpyGD63ORF7600P | |
| 7600 | RM | HpyID2ORF6760P (97% identity) | HpyGD63ORF7600P | |
| 7605 | ComF family protein | |||
| 7805 | transcription termination/antitermination | |||
| 5 | RM | HpyK022ORF7065P (81% identity) | HpyGD63ORF5P | |
| 10 | 713 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 665 | rod shape-determining protein MreC | |||
| 670 | R | HpyMA15ORF205P (94% identity) | HpyGD63ORF675P | |
| 675 | M | M.HpyNCI26ORFEP (84% identity) | M.HpyGD63ORF675P | |
| 680 | DNA-binding response regulator | |||
| 7225 | DNA/RNA non-specific endonuclease | |||
| 7230 | M | M.HpySW12ORF6900P (96% identity) | M.HpyGD63ORF7230P | |
| 7235 | R | HpyKG8ORF1310P (90% identity) | HpyGD63ORF7230P | |
| 7240 | type III restriction endonuclease subunit R | |||
| 10 | 713 aa hypothetical protein | |||
| 15 | R | HpyV001ORF7355P (95% identity) | HpyGD63ORF20P | |
| 20 | M | M.Hpy04ORFJP (96% identity) | M.HpyGD63ORF20P | |
| 25 | ATP-dependent DNA helicase RecG | |||