Neisseria gonorrhoeae 980016-16 |
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Putative Neisseria gonorrhoeae 980016-16 RM systems
Ref: Hirk,S. et al. unpublished
REBASE ref # 26993
Contig set: 2,233,553 bp
GenBank #: PTPG00000000 (NZ_PTPG00000000)
REBASE acronym: Ngo1616
Org_num: 30960
All begin C5B30_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3730 | ATP-dependent Clp protease ATP-binding subunit | |||
| 3735 | R | Ngos1291ORF7750P (100% identity) | Ngo1616ORF3755P | |
| 3740 | sodium:proton exchanger | |||
| 3745 | S | S.NgoWNII (100% identity) | S.Ngo1616ORF3755P | |
| 3750 | DNA damage-inducible protein D | |||
| 3755 | M | M.Ngo4718ORF1640P (100% identity) | M.Ngo1616ORF3755P | |
| 3760 | ADP-L-glycero-D-mannoheptose-6-epimerase | |||
| 7815 | replication-associated recombination protein A | |||
| 7820 | R | NgoWOIP (100% identity) | GAGNNNNNTAC | Ngo1616ORF7845P |
| 7825 | hydroxyacid dehydrogenase | |||
| 7830 | S | S.Ngos1291I (100% identity) | GAGNNNNNTAC | S.Ngo1616ORF7845P |
| 7835 | 186 aa hypothetical protein | |||
| 7840 | 0 aa hypothetical protein | |||
| 7845 | M | M.Ngos1291I (100% identity) | GAGNNNNNTAC | M.Ngo1616ORF7845P |
| 7850 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12605 | replication initiation factor | |||
| 12610 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo1616ORF12620P | |
| ??? | R | NgoTFGB2ORF1219P (100% identity) | Ngo1616ORF12620P | |
| ??? | M | M.Ngos1291ORF65P (100% identity) | M.Ngo1616ORF12620P | |
| 12630 | 48 aa hypothetical protein | |||
| 7700 | 3-isopropylmalate dehydrogenase | |||
| 7705 | R | Ngos1291ORF9120P (100% identity) | GGNNCC | Ngo1616ORF7710P |
| 7710 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo1616ORF7710P |
| 7715 | 3-isopropylmalate dehydratase small subunit | |||
| 40 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 45 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo1616ORF50P |
| 50 | M | M.Ngos1291ORF10080P (100% identity) | GCCGGC | M.Ngo1616ORF50P |
| 55 | anthranilate synthase component I | |||
| 11900 | excinuclease ABC subunit UvrA | |||
| 11905 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo1616ORF11910P |
| 11910 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo1616ORF11910P |
| 11915 | transposase | |||
| 3300 | GTPase ObgE | |||
| 3305 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo1616ORF3305P |
| 3310 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo1616ORF3305P |
| 3315 | cysteine--tRNA ligase | |||
| 2560 | ribosome-recycling factor | |||
| 2565 | M | M.NgoSH240ORFKP (100% identity) | GGCC | M.Ngo1616ORF2565P |
| 2570 | R | Ngos1291ORF3515P (100% identity) | GGCC | Ngo1616ORF2565P |
| 2575 | group 2 glycosyl transferase | |||
| 7015 | 93 aa hypothetical protein | |||
| 7020 | R | Ngo4718ORF4860P (100% identity) | GGTGA | Ngo1616ORF7025P |
| 7025 | M | M1.NgoFQ35ORF11380P (100% identity) | GGTGA | M1.Ngo1616ORF7025P |
| 7030 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.Ngo1616ORF7025P |
| 7035 | RNA-binding transcriptional accessory protein | |||
| 1170 | phenylalanine--tRNA ligase subunit alpha | |||
| 1175 | V | V.NgoWSORF391P (100% identity) | V.Ngo1616ORFAP | |
| ??? | M | M.NgoWSORF391P (100% identity) | M.Ngo1616ORFAP | |
| 1190 | R | NgoWSORF391P (100% identity) | Ngo1616ORFAP | |
| 1195 | phenylalanine--tRNA ligase subunit beta | |||
| 1950 | leucine--tRNA ligase | |||
| 1955 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo1616ORF1960P |
| ??? | M | M.NgoCT213ORF40P (100% identity) | M.Ngo1616ORF1960P | |
| 1975 | 0 aa hypothetical protein | |||
| 1485 | IS1595 family transposase | |||
| 1490 | RM | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | Ngo1616ORF1490P |
| 1495 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo1616ORF1490P |
| 1500 | 0 aa hypothetical protein | |||
| 1530 | DEAD/DEAH box helicase | |||
| 1535 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo1616ORF1540P |
| 1540 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo1616ORF1540P |
| 1545 | 77 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10840 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 10845 | R | NgoWPIIP (100% identity) | CCACC | Ngo1616ORF10850P |
| 10850 | M | M.Ngos1291ORF8455P (100% identity) | CCACC | M.Ngo1616ORF10850P |
| 5940 | tRNA pseudouridine(55) synthase TruB | |||
| ??? | M | M.Ngo9ORF1715P (99% identity) | M.Ngo1616ORF5945P | |
| 5955 | R | Ngos1291ORF8930P (100% identity) | Ngo1616ORF5945P | |
| 5960 | alpha-hydroxy-acid oxidizing protein | |||