Bifidobacterium bifidum PRL2010 |
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Putative Bifidobacterium bifidum PRL2010 RM systems
Ref: Turroni,F. et al. Proc. Natl. Acad. Sci. U.S.A. (2010) In press
REBASE ref # 12104
Complete sequence: 2,214,656 bp
GenBank #: CP001840 (NC_014638)
REBASE acronym: Bbi2010
Org_num: 6382
All begin BBPR_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 174 | 481 aa Conserved hypothetical protein | |||
| 175 | M | M.Bbi8628BORF167P (99% identity) | M.Bbi2010ORF175P | |
| 177 | S | S.BloInORF2900P (100% identity) | S.Bbi2010ORF175P | |
| 178 | Abi family protein | |||
| 179 | R | Bbi8628BORF167P (99% identity) | Bbi2010ORF175P | |
| 180 | Mobilization protein | |||
| 1148 | ArgH Argininosuccinate lyase | |||
| 1149 | R | PmeBin303ORFGP (95% identity) | Bbi2010ORF1152P | |
| 1150 | Transcriptional regulator | |||
| 1151 | S | S.BbiS17ORF1093P (65% identity) | S.Bbi2010ORF1152P | |
| 1152 | M | M.BbiS6ORF5040P (99% identity) | M.Bbi2010ORF1152P | |
| 1153 | 280 aa Hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14 | 84 aa Hypothetical protein | |||
| 15 | R | Blo7055ORF6905P (31% identity) | GTCGAC | Bbi2010ORF15P |
| 16 | Modification methylase | |||
| 15 | restriction enzyme | |||
| 16 | M | M.Bbi10347ORF357P (95% identity) | CTGCAG | M.Bbi2010ORF16P |
| 17 | R | R2.Bbi10347ORF357P (100% identity) | CTGCAG | Bbi2010ORF16P |
| 18 | 406 aa Hypothetical protein | |||
| 164 | Type II restriction-modification system | |||
| 165 | R | Bbi3115ORF1637P (98% identity) | GGCGCC | Bbi2010ORF165P |
| 166 | DNA-binding protein | |||
| 536 | 16S RNA methylase | |||
| 537 | R | BbiS6ORF8015P (100% identity) | Bbi2010ORF537P | |
| 538 | HflX GTP-binding protein | |||
| 782 | TnpB trasposase subunit B | |||
| ??? | M | M.PmeBin303ORFAP (100% identity) | GAATTC | M.Bbi2010ORFAP |
| 784 | 84 aa Hypothetical protein | |||
| 858 | 271 aa Conserved hypothetical protein | |||
| 859 | RM | Bbi8628BORF2159P (99% identity) | Bbi2010ORF859P | |
| ??? | M | Bbi7004ORF2877BP (71% identity) | M1.Bbi2010ORF859P | |
| ??? | M | BpsD2ORF11730AP (93% identity) | M2.Bbi2010ORF859P | |
| 863 | 207 aa Conserved hypothetical protein | |||
| 859 | Type III restriction system endonuclease | |||
| ??? | RM | Bbi7004ORF2877BP (100% identity) | Bbi2010ORF860P | |
| 863 | 207 aa Conserved hypothetical protein | |||
| 966 | 390 aa Conserved hypothetical protein | |||
| 967 | R | Bbi7004ORF2948P (100% identity) | GCSGC | Bbi2010ORF968P |
| 968 | M | M1.Bbi7004ORF2948P (96% identity) | GCSGC | M.Bbi2010ORF968P |
| 969 | COPII coat assembly protein Sec16 | |||