Clostridioides difficile DSM 29745 |
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Putative Clostridioides difficile DSM 29745 RM systems
Ref: Riedel,T. et al. Int. J. Med. Microbiol. 307 (6), 311-320 (2017)
REBASE ref # 27454
Complete sequence: 4,240,646 bp
GenBank #: CP019857
REBASE acronym: Cdi29745
Org_num: 31012
All begin CDIF29745_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3195 | 687 aa hypothetical protein | |||
| 3196 | R | Pdi9689IIP (100% identity) | CANNNNNNNTAAAG | Cdi29745ORF3201P |
| 3197 | 142 aa hypothetical protein | |||
| 3198 | DNA polymerase subunit beta | |||
| 3199 | 102 aa hypothetical protein | |||
| 3200 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.Cdi29745ORF3201P |
| 3201 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.Cdi29745ORF3201P |
| 3202 | tagatose-bisphosphate aldolase | |||
| 3568 | 424 aa hypothetical protein | |||
| 3569 | R | CdiTTIIIP (100% identity) | ATCNNNNNNCTC | Cdi29745ORF3571P |
| 3570 | S | S.CdiTTIII (100% identity) | ATCNNNNNNCTC | S.Cdi29745ORF3571P |
| 3571 | M | M.CdiTTIII (100% identity) | ATCNNNNNNCTC | M.Cdi29745ORF3571P |
| 3572 | C | C.SanVSI16ORF6495P (100% identity) | C.Cdi29745ORF3571P | |
| 3573 | single-strand binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2936 | phospholipase | |||
| 2937 | M | M.Pdi9689I (100% identity) | CAAAAA | M.Cdi29745ORF2937P |
| 2938 | badm/rrf2 family transcriptional regulator | |||
| 3326 | two-component response regulator | |||
| 3327 | M | M.Pdi9689DndCP (100% identity) | M.Cdi29745DndCP | |
| 3328 | DNA sulfur modification protein DndD | |||
| 3327 | sulfurtransferase DndC | |||
| 3328 | M | M.Pdi9689DndDP (100% identity) | M.Cdi29745DndDP | |
| 3329 | DNA sulfur modification protein DndE | |||
| 3328 | DNA sulfur modification protein DndD | |||
| 3329 | M | M.Pdi9689DndEP (100% identity) | M.Cdi29745DndEP | |
| 3330 | 1078 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2229 | sigma-54-dependent transcriptional regulator | |||
| 2230 | R | Pdi9689McrCP (100% identity) | Cdi29745McrCP | |
| 2231 | R | Pdi9689McrBP (100% identity) | Cdi29745McrBP | |
| 2232 | cell division protein FtsZ | |||