Clostridioides difficile DSM 29632 |
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Putative Clostridioides difficile DSM 29632 RM systems
Ref: Riedel,T. et al. Int. J. Med. Microbiol. 307 (6), 311-320 (2017)
REBASE ref # 27454
Complete sequence: 4,175,826 bp
GenBank #: CP019860
REBASE acronym: Cdi29632
Org_num: 31009
All begin CDIF29632_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3111 | 687 aa hypothetical protein | |||
| 3112 | R | Cdi92IIIP (99% identity) | GCAYNNNNNNTTC | Cdi29632ORF3117P |
| 3113 | 142 aa hypothetical protein | |||
| 3114 | DNA polymerase subunit beta | |||
| 3115 | 102 aa hypothetical protein | |||
| 3116 | S | S.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | S.Cdi29632ORF3117P |
| 3117 | M | M.Cdi92III (100% identity) | GCAYNNNNNNTTC | M.Cdi29632ORF3117P |
| 3118 | tagatose-bisphosphate aldolase | |||
| 3224 | 145 aa hypothetical protein | |||
| 3225 | R | Cdi92IIP (100% identity) | AYGNNNNNNCTG | Cdi29632ORF3230P |
| 3226 | 300 aa hypothetical protein | |||
| 3227 | 97 aa hypothetical protein | |||
| 3228 | 150 aa hypothetical protein | |||
| 3229 | S | S.PdiBJ08ORFAP (100% identity) | AYGNNNNNNCTG | S.Cdi29632ORF3230P |
| 3230 | M | M.CdiRSS2ORF3900P (100% identity) | AYGNNNNNNCTG | M.Cdi29632ORF3230P |
| 3231 | pseudogene | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2848 | phospholipase | |||
| 2849 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi29632ORF2849P |
| 2850 | badm/rrf2 family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2152 | sigma-54-dependent transcriptional regulator | |||
| 2153 | R | Pdi6602McrCP (100% identity) | Cdi29632McrCP | |
| 2154 | R | Pdi6602McrBP (100% identity) | Cdi29632McrBP | |
| 2155 | cell division protein FtsZ | |||