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Putative Clostridioides difficile DSM 29688 RM systems
Ref: Riedel,T. et al. Int. J. Med. Microbiol. 307 (6), 311-320 (2017)
REBASE ref # 27454
Complete sequence: 4,228,964 bp
GenBank #: CP019858
REBASE acronym: Cdi29688
Org_num: 31016
All begin CDIF29688_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
3292 | 687 aa hypothetical protein | |||
3293 | R | Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | Cdi29688ORF3298P |
3294 | 142 aa hypothetical protein | |||
3295 | DNA polymerase subunit beta | |||
3296 | 102 aa hypothetical protein | |||
3297 | S | S.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | S.Cdi29688ORF3298P |
3298 | M | M.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | M.Cdi29688ORF3298P |
3299 | tagatose-bisphosphate aldolase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1128 | 111 aa hypothetical protein | |||
1129 | M | M.PdiZ31ORF1645P (100% identity) | M.Cdi29688ORF1129P | |
1130 | 69 aa hypothetical protein | |||
1700 | 39 aa hypothetical protein | |||
1701 | M | M.CdiS0352ORF4245P (100% identity) | M.Cdi29688ORF1701P | |
1702 | 65 aa hypothetical protein | |||
1933 | N-acetylmuramoyl-l-alanine amidase | |||
1934 | M | M.Pdi6602ORF250005P (100% identity) | M.Cdi29688ORF1934P | |
1935 | two-component response regulator | |||
3034 | phospholipase | |||
3035 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi29688ORF3035P |
3036 | badm/rrf2 family transcriptional regulator | |||
3386 | 33 aa hypothetical protein | |||
3387 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Cdi29688ORF3387P |
3388 | 872 aa hypothetical protein | |||
3575 | 76 aa hypothetical protein | |||
3576 | M | M.CdiRT010ORF11280P (100% identity) | M.Cdi29688ORF3576P | |
3577 | 111 aa hypothetical protein | |||
3980 | 112 aa hypothetical protein | |||
3981 | R | Pdi6602ORF790080P (100% identity) | Cdi29688ORF3982P | |
3982 | M | M.Pdi6602ORF790080P (100% identity) | M.Cdi29688ORF3982P | |
3983 | 63 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2334 | sigma-54-dependent transcriptional regulator | |||
2335 | R | Pdi6602McrCP (100% identity) | Cdi29688McrCP | |
2336 | R | Pdi6602McrBP (100% identity) | Cdi29688McrBP | |
2337 | cell division protein FtsZ | |||
3291 | integral membrane protein | |||
3292 | R | Pdi6602GmrSDP (100% identity) | Cdi29688GmrSDP | |
3293 | type i restriction enzyme r subunit |