Clostridioides difficile DSM 28669 |
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Putative Clostridioides difficile DSM 28669 RM systems
Ref: Riedel,T. et al. Int. J. Med. Microbiol. 307 (6), 311-320 (2017)
REBASE ref # 27454
Complete sequence: 4,137,693 bp
GenBank #: CP012323
REBASE acronym: Cdi28669
Org_num: 31015
All begin CDIF28669_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3161 | 687 aa hypothetical protein | |||
| 3162 | R | PdiBJ08ORFBP (99% identity) | CANNNNNNNTAAAG | Cdi28669ORF3167P |
| 3163 | 142 aa hypothetical protein | |||
| 3164 | DNA polymerase subunit beta | |||
| 3165 | 102 aa hypothetical protein | |||
| 3166 | S | S.Cdi3ORFAP (100% identity) | CANNNNNNNTAAAG | S.Cdi28669ORF3167P |
| 3167 | M | M.Cdi3ORFAP (100% identity) | CANNNNNNNTAAAG | M.Cdi28669ORF3167P |
| 3168 | tagatose-bisphosphate aldolase | |||
| 3205 | 83 aa hypothetical protein | |||
| 3206 | R | Cdi3ORFDP (99% identity) | Cdi28669ORF3210P | |
| 3208 | S | S.Cdi3ORFDP (82% identity) | S.Cdi28669ORF3210P | |
| 3209 | 35 aa hypothetical protein | |||
| 3210 | M | M.Cdi29629ORF3241P (100% identity) | M.Cdi28669ORF3210P | |
| 3213 | C | C.Cdi3ORFDP (100% identity) | C.Cdi28669ORF3210P | |
| 3214 | 78 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2905 | phospholipase | |||
| 2906 | M | M.CdiRSS3ORF14215P (100% identity) | CAAAAA | M.Cdi28669ORF2906P |
| 2907 | badm/rrf2 family transcriptional regulator | |||
| 3214 | 78 aa hypothetical protein | |||
| 3215 | M | M.Cdi29629ORF3246P (100% identity) | M.Cdi28669ORF3215P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2195 | sigma-54-dependent transcriptional regulator | |||
| 2196 | R | PdiBJ08McrCP (100% identity) | Cdi28669McrCP | |
| 2197 | R | PdiBJ08McrBP (99% identity) | Cdi28669McrBP | |
| 2198 | cell division protein FtsZ | |||