Helicobacter pylori KH3 |
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Putative Helicobacter pylori KH3 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,614,842 bp
GenBank #: PHMU00000000 (NZ_PHMU00000000)
REBASE acronym: HpyKH3
Org_num: 30826
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyP22ORFSP (86% identity) | M.HpyKH3ORFE1P | |
| 4 | HrgA like protein | |||
| 19 | 225 aa hypothetical protein | |||
| 21 | R | HpyKH7ORFNP (90% identity) | HpyKH3ORFMP | |
| 23 | S | S.HpyKH22ORFEP (44% identity) | S1.HpyKH3ORFMP | |
| 24 | S | S.HpyKH39ORFNP (59% identity) | S2.HpyKH3ORFMP | |
| 25 | polyphosphate kinase 1 | |||
| 84 | hydroxyethylthiazole kinase | |||
| 86 | R | HpyKH14ORFLP (96% identity) | HpyKH3ORFVP | |
| 88 | 83 aa hypothetical protein | |||
| 180 | M48 family peptidase | |||
| 183 | R | HpyKH29ORFEP (95% identity) | HpyKH3ORFRP | |
| ??? | M | M.HpyP110VII (94% identity) | M.HpyKH3ORFRP | |
| 188 | S | S.Hpys8ORF1200P (96% identity) | S.HpyKH3ORFRP | |
| 189 | glutamine--fructose-6-phosphate transaminase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | 61 aa hypothetical protein | |||
| 2 | M | M2.HpyP008VIP (97% identity) | M.HpyKH3ORFAP | |
| 3 | sodium/proline symporter | |||
| 1 | 107 aa hypothetical protein BB437_07770 | |||
| ??? | RM | HpySP802ORF6645P (90% identity) | HpyKH3ORFB1P | |
| 4 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 1 | M | M.HpyB128KORFAP (94% identity) | M.HpyKH3ORFA1P | |
| 2 | DNA methyltransferase | |||
| 1 | RM | HpyKH30ORFQAP (61% identity) | HpyKH3ORFHP | |
| 2 | -binding protein | |||
| 11 | glycosyltransferase family 8 protein | |||
| 12 | M | M.HpyGRE039ORF255P (95% identity) | M.HpyKH3ORFIP | |
| 15 | S41 family peptidase | |||
| ??? | R | HpyR01ORF6830P (90% identity) | HpyKH3ORFJP | |
| 20 | UDP-N-acetylmuramate dehydrogenase | |||
| 16 | DNA-binding response regulator | |||
| 17 | R | HpyOK304ORFOP (95% identity) | HpyKH3ORFYP | |
| 18 | M | M1.HpyCOL118VII (98% identity) | M1.HpyKH3ORFYP | |
| 19 | M | M1.HpyKH16ORFD1P (100% identity) | GAAGA | M2.HpyKH3ORFYP |
| 20 | site-specific DNA-methyltransferase | |||
| 38 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 39 | M | M.HpyF018XII (98% identity) | GCGC | M.HpyKH3ORFGP |
| 40 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 18 | ATP-dependent helicase | |||
| 20 | M | M.HpyNP09XIII (91% identity) | GTNNAC | M.HpyKH3ORFFP |
| 21 | R | HpyNP03VIIIP (97% identity) | GTNNAC | HpyKH3ORFFP |
| 22 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 35 | Laminin subunit alpha-2 precursor | |||
| 36 | R | HpyBG10VIIIP (98% identity) | TCNNGA | HpyKH3ORFCP |
| 37 | M | M.HpyTW20XII (99% identity) | TCNNGA | M.HpyKH3ORFCP |
| 38 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 52 | 63 aa hypothetical protein | |||
| 53 | R | HpyCOL2ORF2240P (93% identity) | ACGT | HpyKH3ORFC1P |
| 56 | M | M.HpyKH2ORFB1P (96% identity) | ACGT | M.HpyKH3ORFC1P |
| 58 | translational GTPase TypA | |||
| 60 | modification methylase VspI domain protein | |||
| 61 | M | M.HpyFD430ORFGP (97% identity) | ATTAAT | M.HpyKH3ORFD1P |
| 60 | 334 aa hypothetical protein | |||
| 62 | M | M.HpyBR6IX (97% identity) | GATC | M.HpyKH3ORFBP |
| 63 | alpha-1,2-fucosyltransferase | |||
| 85 | metalloendopeptidase like protein | |||
| ??? | R | HpyNCI56VIP (93% identity) | GTAC | HpyKH3ORFTP |
| 88 | M | M.HpyKH22ORFDP (97% identity) | GTAC | M.HpyKH3ORFTP |
| 89 | DNA topoisomerase subunit B | |||
| 75 | restriction endonuclease | |||
| 76 | M | M.HpyKH2ORFJP (64% identity) | M.HpyKH3ORFUP | |
| 107 | HAD family hydrolase | |||
| 108 | M | M.HpyI029I (98% identity) | CATG | M.HpyKH3ORFSP |
| ??? | R | HpyKH44ORFTP (92% identity) | CATG | HpyKH3ORFSP |
| 115 | serine acetyltransferase | |||
| 154 | elongation factor Ts | |||
| 156 | R | HpySP20VIIIP (99% identity) | TGCA | HpyKH3ORFEP |
| 159 | M | M.HpyCOL305IX (90% identity) | M.HpyKH3ORFEP | |
| 160 | 59 aa hypothetical protein | |||
| 149 | 153 aa hypothetical protein | |||
| 150 | M | M.HpyMM09ORF1685P (99% identity) | M.HpyKH3ORFDP | |
| 151 | translation elongation factor 4 | |||
| 212 | 719 aa hypothetical protein | |||
| 213 | RM | HpyR02ORF6755P (86% identity) | HpyKH3ORFQP | |
| 214 | 205 aa hypothetical protein | |||
| 234 | outer membrane protein | |||
| 235 | R | HpyBG1IIIP (93% identity) | CCATC | HpyKH3ORFOP |
| 236 | M | M1.HpyBT302ORFJP (99% identity) | CCATC | M1.HpyKH3ORFOP |
| 237 | M | M1.HpyISR6IV (99% identity) | CCATC | M2.HpyKH3ORFOP |
| 238 | YjgP/YjgQ family permease | |||
| 271 | chaperone protein ClpB | |||
| ??? | M | M.HpyR01ORF1485P (92% identity) | M.HpyKH3ORFKP | |
| 277 | R | HpyISR6VP (81% identity) | HpyKH3ORFKP | |
| 278 | 60 aa hypothetical protein | |||
| 278 | ComF family protein | |||
| 279 | RM | HpyKH41ORFLP (98% identity) | HpyKH3ORFNP | |
| 280 | S | S1.HpyKH45ORFSP (100% identity) | S1.HpyKH3ORFNP | |
| 281 | S | S.HpyFD423ORFI1P (48% identity) | S2.HpyKH3ORFNP | |
| 282 | DNA polymerase I | |||
| 279 | 132 aa hypothetical protein HMPREF1392_01214 | |||
| 280 | M | M.HpyKH16ORFNP (80% identity) | M.HpyKH3ORFLP | |
| 281 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19 | DUF1887 family protein | |||
| 20 | M | M.HpyMM08XIV (94% identity) | M.HpyKH3ORFZP | |
| 22 | R | HpyGE1ORF6780P (92% identity) | HpyKH3ORFZP | |
| 24 | rod shape-determining MreC family protein | |||
| 39 | DNA/RNA non-specific endonuclease | |||
| 40 | M | M.HpySP102ORF6710P (96% identity) | M.HpyKH3ORFXP | |
| 41 | R | HpyIR9XIIIP (92% identity) | HpyKH3ORFXP | |
| 42 | biotin synthase | |||
| 204 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyIN4ORF7015P (96% identity) | M.HpyKH3ORFPP | |
| 209 | R | HpyLI03ORF7395P (95% identity) | HpyKH3ORFPP | |
| 212 | 719 aa hypothetical protein | |||