Ref: Fujisawa,T. et al. DNA Res. 17 (2), 85-103 (2010)

REBASE ref # 11730

Sequence length:GenBank #:
Chromosome: 6,788,435 bp AP011615
Chromosome: 6,818,856 bp AP026945

REBASE acronym: Apl

Org_num: 6010

 

All begin N39L_, NIES39_A, NIES39_B, NIES39_C, NIES39_E, NIES39_G, NIES39_H, NIES39_J, NIES39_K, NIES39_L, NIES39_M, NIES39_O, NIES39_Q

Type I
ORF Gene Most similar Specificity Name
 
Chromosome
 
6610 anthranilate phosphoribosyltransferase
6620 R Apl39ORF6350P (100% identity) AplORF6670P
6630 63 aa hypothetical protein
6640 125 aa hypothetical protein
6650 438 aa hypothetical protein
6660 S S.Apl39ORF6350P (100% identity) S.AplORF6670P
6670 M M.SplZORFAP (98% identity) M.AplORF6670P
6680 serine protease
 
8960 52 aa hypothetical protein
8970 M type I restriction enzyme, modification chain M.AplORF8970P
8980 uncharacterized protein, fragment
 
320 1,4-dihydroxy-2-naphthoate
330 M M.Apl39ORF10320P (100% identity) M.AplORF330P
340 S S.Apl39ORF10320P (100% identity) S.AplORF330P
350 methyltransferase
360 203 aa hypothetical protein
370 190 aa hypothetical protein
380 R Apl39ORF10320P (100% identity) AplORF330P
390 242 aa hypothetical protein
 
1200 49 aa hypothetical protein
??? R Asp9108ORF19130P (100% identity) AplORF1260P
1230 99 aa hypothetical protein
1240 140 aa hypothetical protein
??? S S.Asp9108ORF19130P (100% identity) S.AplORF1260P
1260 M M.SplZORFBP (100% identity) M.AplORF1260P
1270 109 aa hypothetical protein
 
1300 213 aa hypothetical protein
??? R Asp9108ORF19150P (99% identity) AplORF1310P
1360 53 aa hypothetical protein
 
Chromosome
 
10310 1,4-dihydroxy-2-naphthoate
10320 M M.AplORF330P (100% identity) M.Apl39ORF10320P
10330 S S.AplORF330P (100% identity) S.Apl39ORF10320P
10340 methyltransferase
10350 38 aa hypothetical protein
10360 203 aa hypothetical protein
10370 190 aa hypothetical protein
10380 R AplORF330P (100% identity) Apl39ORF10320P
10390 242 aa hypothetical protein
 
38230 49 aa hypothetical protein
??? R Asp9108ORF19130P (100% identity) Apl39ORF38300P
38260 99 aa hypothetical protein
38270 140 aa hypothetical protein
??? S S.AplPORF21900P (100% identity) S.Apl39ORF38300P
38300 M M.SplZORFBP (100% identity) M.Apl39ORF38300P
38310 109 aa hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
3520 DNA repair protein RecO
3530 R Asp9108ORF1515P (100% identity) GRCGYC AplORF3540P
3540 M M.SplZORFNP (100% identity) GRCGYC M.AplORF3540P
3550 photomixotrophic growth related protein PmgA
 
5810 116 aa hypothetical protein
5820 R Asp9108ORF2700P (100% identity) CCGCGG AplORF5830P
5830 M M.AplYZORF2560P (100% identity) CCGCGG M.AplORF5830P
5840 166 aa hypothetical protein
 
5880 153 aa hypothetical protein
??? RM Apl39ORF5630P (100% identity) AplORF5890P
5970 104 aa hypothetical protein
 
7160 helicase
7170 RM Apl39ORF6810P (100% identity) AplORF7170P
7180 55 aa hypothetical protein
 
8910 56 aa hypothetical protein
8920 M M.SplZORFDP (98% identity) CGTACG M.AplORF8920P
8930 R SplZORFDP (100% identity) CGTACG AplORF8920P
8940 62 aa hypothetical protein
 
190 ribosomal RNA small subunit methyltransferase B
200 M M.Asp9108ORF4400P (100% identity) TACGTA M.AplORF200P
210 R Asp9108ORF4400P (100% identity) TACGTA AplORF200P
220 C C.Asp9108ORF4400P (100% identity) C.AplORF200P
230 polyA polymerase
 
340 type I restriction-modification enzyme S
350 M M.AplPORF3340P (100% identity) CCTNAGG M.AplORF350P
360 203 aa hypothetical protein
 
990 58 aa hypothetical protein
1000 RM AplPORF16010P (100% identity) AplORF1000P
1010 two-component response regulator
 
1100 glutathione S-transferase C-terminal domain
??? M M.Asp9108ORF14670P (100% identity) GGTNACC M.AplORF1110P
??? R Asp9108ORF14670P (100% identity) GGTNACC AplORF1110P
1150 high light inducible protein
 
590 zinc metalloprotease
610 M M.Apl39ORF30310P (100% identity) GCSGC M.AplORF610P
620 3-oxoacyl-[acyl-carrier-protein] synthase
 
780 54 aa hypothetical protein
790 M M.Apl39ORF30460P (100% identity) M.AplORF790P
800 142 aa hypothetical protein
 
470 hemolysin-like protein
480 M M.SplZORFLP (100% identity) CGATCG M.AplORF480P
490 allophycocyanin beta-18 subunit
 
2950 273 aa hypothetical protein
2960 M M.Apl39ORF33810P (100% identity) GGYRCC M.AplORF2960P
2970 R Asp9108ORF16900P (100% identity) GGYRCC AplORF2960P
2980 cobalamin biosynthesis protein CobW
 
4440 485 aa hypothetical protein
4450 M M.Asp9108ORF17565P (100% identity) M.AplORF4450P
4460 84 aa hypothetical protein
 
4020 704 aa hypothetical protein
4030 M M.SplZORFGP (100% identity) GCTNAGC M.AplORF4030P
4040 R Asp9108ORF20455P (100% identity) GCTNAGC AplORF4030P
4050 acriflavin resistance protein family protein
 
4630 265 aa hypothetical protein
4640 R Asp9108ORF20760P (100% identity) CTGCAG AplI
4650 M M.SplZORFOP (100% identity) CTGCAG M.AplI
4660 UDP-N-acetylglucosamine-2-epimerase
 
4910 S-adenosylmethionine decarboxylase proenzyme
4920 M M.Asp9108ORF20865P (100% identity) GATC M.AplORF4920P
4930 reverse transcriptase homolog
 
1680 130 aa hypothetical protein
1690 C C.AplYZORF19815P (100% identity) C.AplORF1710P
1700 R Asp9108ORF21810P (100% identity) RCATGY AplORF1710P
1710 M M.Asp9108ORF21810P (100% identity) RCATGY M.AplORF1710P
1720 49 aa hypothetical protein
 
6680 M M.Apl39ORF47920P (100% identity) M.AplORF6680P
6690 63 aa hypothetical protein
 
570 484 aa hypothetical protein
580 M M.Asp9108ORF24525P (96% identity) GACNNNGTC M.AplORF580P
590 R AplPORF16570P (100% identity) GACNNNGTC AplORF580P
600 beta-lactamase domain protein
 
2460 glutathione-dependent formaldehyde
2470 M M.Asp9108ORF25595P (100% identity) GGWCC M.AplORF2470P
2480 xanthine/uracil/vitamin C permease family
 
2580 urease accessory protein D
2590 R Asp9108ORF27710P (100% identity) ACCGGT AplORF2600P
2600 M M.Asp9108ORF27710P (100% identity) ACCGGT M.AplORF2600P
2610 98 aa hypothetical protein
 
4150 reverse transcriptase homolog
4160 M M.Apl39ORF56040P (100% identity) M.AplORF4160P
4170 PIN domain protein
 
5480 81 aa hypothetical protein
??? RM Asp9108ORF29055P (100% identity) AplORF5490P
5510 129 aa hypothetical protein
 
5740 485 aa hypothetical protein
5750 RM M.Asp9108ORF29180P (100% identity) AplORF5750P
5760 102 aa hypothetical protein
 
1170 L-cysteine/cystine lyase
1180 M M.Apl39ORF60450P (100% identity) ATGCAT M.AplORF1180P
1190 R Apl39ORF60460P (100% identity) ATGCAT AplORF1180P
1200 phosphoribosyltransferase
 
1850 84 aa hypothetical protein
1860 M M.Asp9108ORF31020P (100% identity) M.AplORF1860P
 
2430 175 aa hypothetical protein
2440 M M.AplYZORF28525P (100% identity) TTCGAA M.AplORF2440P
2450 R AplYZORF28525P (52% identity) TTCGAA AplORF2440P
2460 50 aa hypothetical protein
 
Chromosome
 
3300 DNA repair protein RecO
3310 R Asp9108ORF1515P (99% identity) GRCGYC Apl39ORF3320P
3320 M M.SplZORFNP (100% identity) GRCGYC M.Apl39ORF3320P
3330 photomixotrophic growth related protein PmgA
 
5560 116 aa hypothetical protein
5570 R Asp9108ORF2700P (100% identity) CCGCGG Apl39ORF5580P
5580 M M.Asp9108ORF2700P (100% identity) M.Apl39ORF5580P
5590 166 aa hypothetical protein
 
5620 153 aa hypothetical protein
??? RM AplORF5890P (100% identity) Apl39ORF5630P
5700 143 aa hypothetical protein
 
6800 helicase
6810 RM AplORF7170P (100% identity) Apl39ORF6810P
6820 DNA polymerase III beta subunit
 
8460 138 aa hypothetical protein
8470 M M.SplZORFDP (100% identity) CGTACG M.Apl39ORF8470P
8480 R SplZORFDP (100% identity) CGTACG Apl39ORF8470P
8490 75 aa hypothetical protein
 
9040 ribosomal RNA small subunit methyltransferase B
9050 M M.Asp9108ORF4400P (100% identity) TACGTA M.Apl39ORF9050P
9060 R Asp9108ORF4400P (100% identity) TACGTA Apl39ORF9050P
9070 C C.Asp9108ORF4400P (100% identity) C.Apl39ORF9050P
9080 polyA polymerase
 
10330 type I restriction-modification enzyme S
10340 M M.AplPORF3340P (100% identity) CCTNAGG M.Apl39ORF10340P
10350 38 aa hypothetical protein
 
23630 400 aa hypothetical protein
23640 RM AplPORF16010P (100% identity) Apl39ORF23640P
23650 two-component response regulator
 
29340 glutathione S-transferase C-terminal domain
??? M M.Asp9108ORF14670P (100% identity) GGTNACC M.Apl39ORF29350P
??? R Asp9108ORF14670P (100% identity) GGTNACC Apl39ORF29350P
29380 high light inducible protein
 
30290 zinc metalloprotease
30310 M M.AplORF610P (100% identity) GCSGC M.Apl39ORF30310P
30320 3-oxoacyl-[acyl-carrier-protein] synthase
 
30450 75 aa hypothetical protein
30460 M M.AplORF790P (100% identity) M.Apl39ORF30460P
30470 142 aa hypothetical protein
 
31530 hemolysin-like protein
31540 M M.SplZORFLP (100% identity) CGATCG M.Apl39ORF31540P
31550 allophycocyanin beta-18 subunit
 
33800 273 aa hypothetical protein
33810 M M.AplORF2960P (100% identity) GGYRCC M.Apl39ORF33810P
33820 R Asp9108ORF16900P (100% identity) GGYRCC Apl39ORF33810P
33830 cobalamin biosynthesis protein CobW
 
35100 485 aa hypothetical protein
35110 M M.Asp9108ORF17565P (100% identity) M.Apl39ORF35110P
35120 84 aa hypothetical protein
 
38350 88 aa hypothetical protein
??? R Asp9108ORF19150P (100% identity) CTGGAG Apl39ORF38360P
38410 34 aa hypothetical protein
 
40910 704 aa hypothetical protein
40920 M M.SplZORFGP (100% identity) GCTNAGC M.Apl39ORF40920P
40930 R Asp9108ORF20455P (100% identity) GCTNAGC Apl39ORF40920P
40940 acriflavin resistance protein family protein
 
41280 228 aa hypothetical protein
41290 RM Asp9108ORF20650P (100% identity) Apl39ORF41290P
41300 80 aa hypothetical protein
 
41480 265 aa hypothetical protein
41490 R Asp9108ORF20760P (100% identity) CTGCAG Apl39ORF41500P
41500 M M.SplZORFOP (100% identity) CTGCAG M.Apl39ORF41500P
41510 UDP-N-acetylglucosamine-2-epimerase
 
41720 S-adenosylmethionine decarboxylase proenzyme
41730 M M.Asp9108ORF20865P (100% identity) GATC M.Apl39ORF41730P
41740 46 aa hypothetical protein
 
43420 type I restriction-modification system S
43430 R Asp9108ORF21810P (100% identity) RCATGY Apl39ORF43440P
43440 M M.Asp9108ORF21810P (100% identity) RCATGY M.Apl39ORF43440P
43450 carbamoyl-phosphate synthase large subunit
 
47920 M M.AplORF6680P (100% identity) M.Apl39ORF47920P
47930 348 aa hypothetical protein
 
48590 484 aa hypothetical protein
48600 M M.Asp9108ORF24525P (100% identity) M.Apl39ORF48600P
48610 73 aa hypothetical protein
 
50480 glutathione-dependent formaldehyde
50490 M M.Asp9108ORF25595P (100% identity) GGWCC M.Apl39ORF50490P
50500 xanthine/uracil/vitamin C permease family
 
54050 485 aa hypothetical protein
54060 M M.Asp9108ORF27410P (100% identity) M.Apl39ORF54060P
54070 84 aa hypothetical protein
 
54600 urease accessory protein D
54610 R Asp9108ORF27710P (100% identity) ACCGGT Apl39ORF54620P
54620 M M.Asp9108ORF27710P (100% identity) ACCGGT M.Apl39ORF54620P
54630 98 aa hypothetical protein
 
56030 reverse transcriptase homolog
56040 M M.AplORF4160P (100% identity) M.Apl39ORF56040P
56050 PIN domain protein
 
57290 81 aa hypothetical protein
??? RM Asp9108ORF29055P (100% identity) Apl39ORF57300P
57320 116 aa hypothetical protein
 
57530 485 aa hypothetical protein
57540 M M.Asp9108ORF29180P (100% identity) M.Apl39ORF57540P
57550 102 aa hypothetical protein
 
60440 L-cysteine/cystine lyase
60450 M M.AplORF1180P (100% identity) ATGCAT M.Apl39ORF60450P
60460 385 aa hypothetical protein
 
60450 type II DNA modification methyltransferase
60460 R AplORF1180P (100% identity) ATGCAT Apl39ORF60460P
60470 phosphoribosyltransferase
 
61110 84 aa hypothetical protein
61120 M M.Asp9108ORF31020P (100% identity) M.Apl39ORF61120P
 
61680 175 aa hypothetical protein
61690 M M.AplYZORF28525P (100% identity) TTCGAA M.Apl39ORF61690P
61700 117 aa hypothetical protein
 
63560 asparagine synthetase
63570 M M.Asp9108DndDP (100% identity) M.Apl39DndDP
63580 527 aa hypothetical protein
 
63570 661 aa hypothetical protein
63580 M M.Asp9108DndCP (83% identity) M.Apl39DndCP
63590 526 aa hypothetical protein
Type IV
ORF Gene Most similar Specificity Name
 
Chromosome
 
560 2-hydroxy-6-oxohepta-2,4-dienoate
570 R Apl39MrrP (100% identity) AplMrrP
580 DNA methyltransferase
 
Chromosome
 
48580 2-hydroxy-6-oxohepta-2,4-dienoate
48590 R AplMrrP (100% identity) Apl39MrrP
48600 DNA methyltransferase
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